BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG04RM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig563 377 e-104
3x_Contig185 170 3e-42
>3x_Contig563
Length = 1285
Score = 377 bits (190), Expect = e-104
Identities = 200/202 (99%), Gaps = 1/202 (0%)
Strand = Plus / Minus
Query: 319 cgtgcgcgtgcgcacgcgggaggttccgaatgtttttgattttgggcttcgcgaagccca 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 cgtgcgcgtgcgcacgcgggaggttccgaatgtttttgattttgggcttcgcgaagccca 1226
Query: 379 aaaaccaattaattgattaaattaaaaaaaaataaaaagtgtttaacacacaggggctcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 aaaaccaattaattgattaaattaaaaaaaaataaaaagtgtttaacacacaggggctcc 1166
Query: 439 gccgggaatcgaacccgggacctcccgcaccctaagcggaaatcatacctctagaccacg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 gccgggaatcgaacccgggacctcccgcaccctaagcggaaatcatacctctagaccacg 1106
Query: 499 aagccattttgggtcaaatttt 520
|||||| ||| |||||||||||
Sbjct: 1105 aagcca-tttaggtcaaatttt 1085
>3x_Contig185
Length = 1072
Score = 170 bits (86), Expect = 3e-42
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 49 cttcttttttttttaaattagtattcatatttcaaaatttagacatttcagccatccttg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 cttcttttttttttaaattagtattcatatttcaaaatttagacatttcagccatccttg 27
Query: 109 tcggctccttgataagaattaatcgg 134
||||||||||||||||||||||||||
Sbjct: 26 tcggctccttgataagaattaatcgg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,635
Number of Sequences: 1807
Number of extensions: 10635
Number of successful extensions: 151
Number of sequences better than 1.0e-20: 2
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)