BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG05FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1086 0.0
>3x_Contig1755
Length = 22936
Score = 1086 bits (548), Expect = 0.0
Identities = 596/610 (97%), Gaps = 2/610 (0%)
Strand = Plus / Plus
Query: 88 tgtttcttttttttccagttgatcactacaatcattatcaaattctccgtctagatccaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8771 tgtttcttttttttccagttgatcactacaatcattatcaaattctccgtctagatccaa 8830
Query: 148 tgtcagagtggaaagtcgatcctgataacaggagaaggttgttacagttacaaaaagttg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8831 tgtcagagtggaaagtcgatcctgataacaggagaaggttgttacagttacaaaaagttg 8890
Query: 208 gtggaaacaagaaatgccttgactgtggggctcataatccacaatgggcctcgcctaaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8891 gtggaaacaagaaatgccttgactgtggggctcataatccacaatgggcctcgcctaaat 8950
Query: 268 tcggtgttttcatttgtttggaatgtgccggtattcaccgaggattaggagtgcacatct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8951 tcggtgttttcatttgtttggaatgtgccggtattcaccgaggattaggagtgcacatct 9010
Query: 328 ccttcgttagatccatcactatggatcagttcaaatcagacgaactagttagaatggaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9011 ccttcgttagatccatcactatggatcagttcaaatcagacgaactagttagaatggaaa 9070
Query: 388 acggtggtaatgacaaatttactgagtatctggaagaccatgggattgattcgagtttac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9071 acggtggtaatgacaaatttactgagtatctggaagaccatgggattgattcgagtttac 9130
Query: 448 ctcagaagttgaagtatgataacgttattgcttcggattat-aagataaactaactgcta 506
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9131 ctcagaagttgaagtatgataacgttattgcttcggattataaagataaactaactgcta 9190
Query: 507 tctgtgaaagcanagaatgggaagaacctgatcgctctgattttgaccccacccagctta 566
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9191 tctgtgaaagcaaagaatgggaagaacctgatcgctctgattttgacccaacccagctta 9250
Query: 567 cagcaactaactctaggtncggtacccctcagctaaattgttcattgtctgaaaactttg 626
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||
Sbjct: 9251 cagcaactaactctaggtccggtacccctcagctaaatggttcattgtctgaaaaacttg 9310
Query: 627 gttctgaagaagcattaaacc-aaaggaaaaaaatgaatcctattttgctacactcggtg 685
| |||||||||||| |||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct: 9311 gctctgaagaagcagtaaaccaaaaggagaaaaatgaatcctatttcgctacactcggtg 9370
Query: 686 gggaaaactt 695
| |||||||
Sbjct: 9371 agaaaaactt 9380
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7040
Number of Sequences: 1807
Number of extensions: 7040
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)