BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG05RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 1285 0.0
>3x_Contig1192
Length = 5015
Score = 1285 bits (648), Expect = 0.0
Identities = 718/733 (97%), Gaps = 8/733 (1%)
Strand = Plus / Plus
Query: 59 cgttcctgtacatcaacatctacagttttaatataattatcagcagtcttttcttctcct 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3318 cgttcctgtacatcaacatctacagttttaatataattatcagcagtcttttcttctcct 3377
Query: 119 tccatatctacatagaacaattcagcgtcgttcgctgaactgtttgattccgaatctcca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3378 tccatatctacatagaacaattcagcgtcgttcgctgaactgtttgattccgaatctcca 3437
Query: 179 ttttcagaaaccacattatcagatcgtatcttgacagttgtgtttttacttggaatttcc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3438 ttttcagaaaccacattatcagatcgtatcttgacagttgtgtttttacttggaatttcc 3497
Query: 239 tgagtatcaacgtcttgttgttcatcttcaccatcttgctcttcctccctcagggatacg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3498 tgagtatcaacgtcttgttgttcatcttcaccatcttgctcttcctccctcagggatacg 3557
Query: 299 ctttgcgaggagttgtaaccgtcagagtttggctcgtcaaaatgttgattctttttcacc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 ctttgcgaggagttgtaaccgtcagagtttggctcgtcaaaatgttgattctttttcacc 3617
Query: 359 aattttaatattaggtcatgagaaggatcatagagttcttttgctttgataaactccacg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3618 aattttaatattaggtcatgagaaggatcatagagttcttttgctttgataaactccacg 3677
Query: 419 ggacgttttcttgatggcaacctgccagtatcgagttcatcagcttccgtcaatcttcca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3678 ggacgttttcttgatggcaacctgccagtatcgagttcatcagcttccgtcaatcttcca 3737
Query: 479 ggcctaaatccaccagatcttaatgaactcttttttgcagtggatccaaagtaataatct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3738 ggcctaaatccaccagatcttaatgaactcttttttgcagtggatccaaagtaataatct 3797
Query: 539 tcaacttgatgtggattcatcaggtcaccacctcctagtaacaactcggatctattcctg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798 tcaacttgatgtggattcatcaggtcaccacctcctagtaacaactcggatctattcctg 3857
Query: 599 ttgatactggtacctnccctatgattctttctttgccttgattcaccatgtggctttgga 658
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3858 ttgatactggtacctcccctatgattctttctttgccttgattcaccatgtggc-ttgga 3916
Query: 659 tttcttgcttttttgacttcccaccacctctggcattatnatgntttatgcccttctttg 718
|||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct: 3917 tttcttgc-tttttgacttcccaccacctctggcattataatg-tttatgcc--tctttg 3972
Query: 719 ccattatcaccatgaactactgctttcaaatttctagcaggctgcaccagggggtgtacc 778
|||||||||| |||| ||||||| |||||||| |||||| |||||| || |||||||| |
Sbjct: 3973 ccattatcacgatgacctactgc-ttcaaattcctagca-gctgcaacaaggggtgta-c 4029
Query: 779 caggcttacctta 791
|||||||||||||
Sbjct: 4030 caggcttacctta 4042
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6857
Number of Sequences: 1807
Number of extensions: 6857
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)