BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZG06FM1.SCF screened BAC_end (1025 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1728 977 0.0 >3x_Contig1728 Length = 20685 Score = 977 bits (493), Expect = 0.0 Identities = 543/555 (97%), Gaps = 4/555 (0%) Strand = Plus / Minus Query: 88 ttccccatatattttgcctttataacaagcactttaccacaatcctgtacggattgtagg 147 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 802 ttccccatatatttt-cctttataacaagcactttaccacaatcctgtacggattgtagg 744 Query: 148 ccagcgtcaaggtactatttcattctagtttatttttcaaaatattatctttttgcatga 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 743 ccagcgtcaaggtactatttcattctagtttatttttcaaaatattatctttttgcatga 684 Query: 208 caataggggaaaactttttatgttacggatgactgaatagataaaacattcgacctaagt 267 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 683 caataggggaaaactttttaagttacggatgactgaatagataaaacattcgacctaagt 624 Query: 268 gattgcattaaacattgctggcaacgcaatccgctggagtcaattaaagttctttaattt 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 623 gattgcattaaacattgctggcaacgcaatccgctggagtcaattaaagttctttaattt 564 Query: 328 atatggttacatagtgttttcgttccttaaatattgaatttcgttcagtcatcacgattg 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 atatggttacatagtgttttcgttccttaaatattgaatttcgttcagtcatcacgattg 504 Query: 388 aaagacctaagctntgacttagcacgaagattataatgtctagaacgtttttcttcctca 447 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 aaagacctaagctttgacttagcacgaagattataatgtctagaacgtttttcttcctca 444 Query: 448 ggaatgtgattctcggtgacatgtatgacatctggtcttgctttcttttcggcaggcttt 507 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 443 ggaatgtgattctcggtgacatgtatgacatctggtcttgctttcttttcggcaggc-tt 385 Query: 508 attccgttcattgagcatactcctttttnctagtttncggttttgcttcttcttctgaag 567 |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| Sbjct: 384 attccgttcattgagcatactccttttt-ctaggtttcggttttgcttcttcttctgaag 326 Query: 568 cggtttcttaaaccttctcatcctcatatttcattatcgtttcaagatcattctttgcgt 627 ||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 cggttcctaaaccctcctcatcctcatatttcattatcgtttcaagatcattctttgcgt 266 Query: 628 ccttgnacgtagttg 642 ||||| ||||||||| Sbjct: 265 ccttg-acgtagttg 252 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8579 Number of Sequences: 1807 Number of extensions: 8579 Number of successful extensions: 43 Number of sequences better than 1.0e-20: 1 length of query: 1025 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1009 effective length of database: 10,329,639 effective search space: 10422605751 effective search space used: 10422605751 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)