BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZG06RM1.SCF screened BAC_end (973 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig985 1647 0.0 >3x_Contig985 Length = 5529 Score = 1647 bits (831), Expect = 0.0 Identities = 898/915 (98%), Gaps = 5/915 (0%) Strand = Plus / Plus Query: 48 tttctcgtgaaatcaggcttttactcaaggcagctattgcgaaaggagctctgcataaaa 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3701 tttctcgtgaaatcaggcttttactcaaggcagctattgcgaaaggagctctgcataaaa 3760 Query: 108 atgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaatccaa 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3761 atgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaatccaa 3820 Query: 168 taaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattatcatag 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3821 taaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattatcatag 3880 Query: 228 atggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaaagaca 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3881 atggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaaagaca 3940 Query: 288 atactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgcagtcaa 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3941 atactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgcagtcaa 4000 Query: 348 aggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctcagaatg 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4001 aggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctcagaatg 4060 Query: 408 ttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggtaccgt 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4061 ttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggtaccgt 4120 Query: 468 cagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgtaccca 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4121 cagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgtaccca 4180 Query: 528 agaaaatagctgctcaagatgagaaaagcaggaggctggaaaggctaaagagatttgcta 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4181 agaaaatagctgctcaagatgagaaaagcaggaggctggaaaggctaaagagatttgcta 4240 Query: 588 gtcctgaaccactaacgtcaacctctaaaagagtgaagatagacgacgacgacagctatt 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4241 gtcctgaaccactaacgtcaacctctaaaagagtgaagatagacgacgacgacagctatt 4300 Query: 648 ccgatctcaacgccatcactaacaaagctttataatttgacaagaacaagccgattgtgg 707 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 4301 ccgatctcaacgccatcactaacaaagcttataaatttgacaagaacaagccgattgtgg 4360 Query: 708 ngcaatgtcaagtgttagagaaaaaatatttaagacttacttctgaacccagatccggc- 766 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 4361 ggcaatgtcaagtgttagagaaaaaatatttaagacttacttctgaa-ccagatccggca 4419 Query: 767 aaagtacgcccgttgtccattttaattaaagctcttgactggattgtga-caagtttcat 825 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct: 4420 aaagtacgcccgttgtccatgttaattaaagctcttgactggattgtgaccaagtttcat 4479 Query: 826 agcggntcgtgctcttatcagtattnctgtgatcagntgaaatctataaggcaggacttg 885 ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 4480 agcggttcgtgctcttatcagtatttctgtgatcagttgaaatctataaggcaggacttg 4539 Query: 886 aaagtgcaaatgatcgagaatgattttactggtactgtttat-agaagcatgc-cgcgca 943 ||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||| Sbjct: 4540 aaagtgcaaatgatcgagaatgattttactgttactgtttataagacgcatgcacgcgca 4599 Query: 944 gcttttgaaaacgga 958 ||| |||| |||||| Sbjct: 4600 gctcttgagaacgga 4614 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6039 Number of Sequences: 1807 Number of extensions: 6039 Number of successful extensions: 35 Number of sequences better than 1.0e-20: 1 length of query: 973 length of database: 10,358,551 effective HSP length: 16 effective length of query: 957 effective length of database: 10,329,639 effective search space: 9885464523 effective search space used: 9885464523 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)