BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG07FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1372 839 0.0
>3x_Contig1372
Length = 7292
Score = 839 bits (423), Expect = 0.0
Identities = 455/463 (98%), Gaps = 2/463 (0%)
Strand = Plus / Minus
Query: 84 tcacctgctcccatagagccatcaaacttctttatgaaatcttctaaagtgtcaggatag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4537 tcacctgctcccatagagccatcaaacttctttatgaaatcttctaaagtgtcaggatag 4478
Query: 144 atgagttgttcacggaaagtactcttattactcatataaggcctttgcggtagataataa 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4477 atgagttgttcacggaaagtactcttattactcatataaggcctttgcggtagataataa 4418
Query: 204 accgtactttcattattgtcatttcttcttggcggcatgatgagcttcgtttgaagacaa 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4417 accgtactttcattattgtcatttcttcttggcggcatgatgagcttcgtttgaagacaa 4358
Query: 264 gggttcaacgactttgaaattggccataatccgcccaagactctaaataacgatgattta 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4357 gggttcaacgactttgaaattggccataatccgcccaagactctaaataacgatgattta 4298
Query: 324 ccacatccatttggtccaatgatcaataagtggttgaatctttccaatttgaaggtcaac 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4297 ccacatccatttggtccaatgatcaataagtggttgaatctttccaatttgaaggtcaac 4238
Query: 384 tctgagatcaacacttgccctgtaggagtgatcaatggcacattttgaaattcgattaca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4237 tctgagatcaacacttgccctgtaggagtgatcaatggcacattttgaaattcgattaca 4178
Query: 444 ttgtcatcatattctacaggaacagtatcatctctttcctttcgtgcattaataatatta 503
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 4177 ttgtcatcatattctacaggaacagtatcatctcttt-cttcggtgcattaataatatta 4119
Query: 504 tccaacttgtcattgaaatttgtttaatccttatgaaaccccc 546
||||||| ||||||| ||||||||||||| | |||| ||||||
Sbjct: 4118 tccaactcgtcattg-aatttgtttaatcttaatgacaccccc 4077
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9736
Number of Sequences: 1807
Number of extensions: 9736
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)