BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG08RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1281 0.0
>3x_Contig1061
Length = 4663
Score = 1281 bits (646), Expect = 0.0
Identities = 724/742 (97%), Gaps = 7/742 (0%)
Strand = Plus / Plus
Query: 49 tatcgattattcatttttgatttgactgatctatagagtgattgagaatggcgtttgatt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3244 tatcgattattcatttttgatttgactgatctatagagtgattgagaatggcgtttgatt 3303
Query: 109 ttcagcaagtaacaatctttactattacttccacaggcacaatcacaacttcctagaatg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3304 ttcagcaagtaacaatctttactattacttccacaggcacaatcacaacttcctagaatg 3363
Query: 169 gtgtctatggaatgtatgaaaagatacctttgtggctcttcaatggaatctatgctctca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3364 gtgtctatggaatgtatgaaaagatacctttgtggctcttcaatggaatctatgctctca 3423
Query: 229 ttatgatttattaacttccatattggatgtctcaggtcccagtcccatttgatgtgaagt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3424 ttatgatttattaacttccatattggatgtctcaggtcccagtcccatttgatgtgaagt 3483
Query: 289 tcttcacctttatcaatgaatcttagagctctaagaacgaactttatctcatcctggtta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3484 tcttcacctttatcaatgaatcttagagctctaagaacgaactttatctcatcctggtta 3543
Query: 349 ttggaattagtcaatttgattgtgactagttcaacattgggattgcatgatcgtctcaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3544 ttggaattagtcaatttgattgtgactagttcaacattgggattgcatgatcgtctcaag 3603
Query: 409 tatctcgttaaatttccacttaacctggcatcaatataaatcggccagtggggatgaata 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604 tatctcgttaaatttccacttaacctggcatcaatataaatcggccagtggggatgaata 3663
Query: 469 atgactttaggttttgcagttccccagactctatagttatttcttggatcttctaagtat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3664 atgactttaggttttgcagttccccagactctatagttatttcttggatcttctaagtat 3723
Query: 529 ttcctttggaaatcaatctctcctaagaattcatcgatgtagtctccttcatcacatnct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3724 ttcctttggaaatcaatctctcctaagaattcatcgatgtagtctccttcatcacatcct 3783
Query: 589 tgcttcaagtatacagctaactttggggtatccaggggaacaatctttgagtgattactg 648
||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct: 3784 tgcttcaagtatacagctaac-ttggggtatcca-gggaacaatc-ttgagtgattactg 3840
Query: 649 tcagaatatggttttattttcattcgnaatangttttgaacgttaatttatgataaggta 708
||||||||||| |||| ||||| ||| |||| | ||||||||||||||||||||||||||
Sbjct: 3841 tcagaatatgg-tttaatttcaatcggaatagg-tttgaacgttaatttatgataaggta 3898
Query: 709 taacccantcgtcattagcggtggtcttttaccaaaagttcaacgcatttatctttgtta 768
||||||| ||||||| ||| |||||||||||| |||||||||||| ||||||||||| ||
Sbjct: 3899 taacccagtcgtcatcagc-gtggtcttttacgaaaagttcaacgtatttatctttg-ta 3956
Query: 769 atattttgaagtcaaagggaga 790
|| ||||||||||||||||||
Sbjct: 3957 atcatttgaagtcaaagggaga 3978
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6635
Number of Sequences: 1807
Number of extensions: 6635
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)