BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG09FM1.SCF screened BAC_end
(997 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig681 1227 0.0
>3x_Contig681
Length = 3369
Score = 1227 bits (619), Expect = 0.0
Identities = 726/752 (96%), Gaps = 9/752 (1%)
Strand = Plus / Minus
Query: 88 agtaaagtgtcatcatcagacttgacacttttggctaaaaattcaaaacacttcgaactt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 agtaaagtgtcatcatcagacttgacacttttggctaaaaattcaaaacacttcgaactt 1830
Query: 148 tcatttgtgcatgtcttcgaaatagaaggtaagctggcatctctcaatgtgcatatcgtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 tcatttgtgcatgtcttcgaaatagaaggtaagctggcatctctcaatgtgcatatcgtt 1770
Query: 208 ctaaaaacgtttatacccaaaaactgtacatgaggttcagacatgaggataacgcgcctg 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 ctaaaaacgtttagacccaaaaactgtacatgaggttcagacatgaggataacgcgcctg 1710
Query: 268 atgaatgtgagaatattagctaatacttcattgctcaacgtcgtttccttatgtctttca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 atgaatgtgagaatattagctaatacttcattgctcaacgtcgtttccttatgtctttca 1650
Query: 328 atgaaaagtacctcttgataatatagcatagcatgcaatagttgctctatcatatcatgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 atgaaaagtacctcttgataatatagcatagcatgcaatagttgctctatcatatcatgt 1590
Query: 388 tctatattgctgtctttacgaattccgttcgcaacaatccagttatatatctcttcttgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 tctatattgctgtctttacgaattccgttcgcaacaatccagttatatatctcttcttgt 1530
Query: 448 actgaattgagatttcgaaggatgtccgtctggaaggaagactcaaaatccgatttggaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 actgaattgagatttcgaaggatgtccgtctggaaggaagactcaaaatccgatttggaa 1470
Query: 508 atcaattctctggctttgagaattactaaattggtattaatgagggcctcccaggatgca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 atcaattctctggctttgagaattactaaattggtattaatgagggcctcccaggatgca 1410
Query: 568 tcatggactttccaagaagccgatgaaatgcttacaaagtgtagaaatatttctacaaac 627
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1409 tcatggactttccaagaagccgatgaaatgcttacaaggtgtagaatattttctacaaac 1350
Query: 628 actagtttttgagtggntccttttccacagtgaaagacanagcagatagtcttttttagt 687
||||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 1349 actag-ttttgagtgg-tccttttccacagtgaaagacaaagcagatagtc-tttttagt 1293
Query: 688 attctaggcactatttaaaataacagccccattttttggcatatttgagaaacttttcgg 747
||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 1292 attctaggcactattaaaaatacgagccccattttttggcatatttgag-aacttttcgg 1234
Query: 748 nctctttactattttcgctgtaactaacaatattactttagagaatttttgaatgatttt 807
||| |||||||||||||||||||||||||||| |||| ||| | |||||||||||| |
Sbjct: 1233 cctc-ttactattttcgctgtaactaacaatataacttaggag-agttttgaatgattct 1176
Query: 808 ggaatccgtaagttttcatttttctgaacaat 839
||| |||||||||||| | |||||||||||
Sbjct: 1175 gga--tcgtaagttttca-tcttctgaacaat 1147
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7622
Number of Sequences: 1807
Number of extensions: 7622
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)