BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG09RM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1584 0.0
>3x_Contig1384
Length = 9372
Score = 1584 bits (799), Expect = 0.0
Identities = 906/933 (97%), Gaps = 7/933 (0%)
Strand = Plus / Plus
Query: 47 tgacttgaaaataactatcgaaaatgcctagcttgtccttctaggaatagccttcttctc 106
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 8040 tgacttgaaaataactatcgaaaatgccaagcttgtccttctaggaatagccttcttctc 8099
Query: 107 ttgcgtttccccactcgagaggcatttttattgctcgcttacgtttatccttcctgcacc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8100 ttgcgtttccccactcgagaggcatttttattgctcgcttacgtttatccttcctgcacc 8159
Query: 167 tttaaattccgatatggaattttttcgtaatgtccaaaattgcaaccattttaaaggtaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160 tttaaattccgatatggaattttttcgtaatgtccaaaattgcaaccattttaaaggtaa 8219
Query: 227 aaaagatcaatgaaggatgaagaatgaaaagaatcaacaactcggtctcttcattcttac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8220 aaaagatcaatgaaggatgaagaatgaaaagaatcaacaactcggtctcttcattcttac 8279
Query: 287 tgttactatacactactcctagattctgatagtggtagcatcaatggtgaagtaccagta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280 tgttactatacactactcctagattctgatagtggtagcatcaatggtgaagtaccagta 8339
Query: 347 actaaagatgagggatccaacagagttacaacctgtgcattcattgccatctttacgatc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8340 actaaagatgagggatccaacagagttacaacctgtgcattcattgccatctttacgatc 8399
Query: 407 cggtactaaatcaatagcaagcgatgaggcatctgagcctaaacaattacattcagatag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8400 cggtactaaatcaatagcaagcgatgaggcatctgagcctaaacaattacattcagatag 8459
Query: 467 caggattaactgtggtgatgtcgctgatcctgatatacagtatattggacctaatacaga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8460 caggattaactgtggtgatgtcgctgatcctgatatacagtatattggacctaatacaga 8519
Query: 527 aaaggtagagtccttgagtcagaaaatttcaaagataagcagtctccgagataagtccct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8520 aaaggtagagtccttgagtcagaaaatttcaaagataagcagtctccgagataagtccct 8579
Query: 587 tgttgttcccagatcagaaagaagaggattgcttgcgaacctagcgataatcccggaata 646
||||||||||| |||| ||| || || ||| ||| |||||||||||||||||||||||||
Sbjct: 8580 tgttgttcccatatcataaataatagtatttctttcgaacctagcgataatcccggaata 8639
Query: 647 taaagactctagagagtatccacgacacttgaagtcatttatcgtacttatcattgcata 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8640 taaagactctagagagtatccacgacacttgaagtcatttatcgtacttatcattgcata 8699
Query: 707 tggagctgtcatgggtcccatgggaacttnctatta-tttccctgcaattggtccttnta 765
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct: 8700 tggagctgtcatgggtcccatgggaactt-ctattattttccctgcaattggtcctt-ta 8757
Query: 766 gtagcgnatttcgatacatcgacgataatggtcgatgtctctgttggtatctatttattg 825
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8758 gtagcggatttcgatacatcgacgataatggtcgatgtctctgttggtatctatttattg 8817
Query: 826 agccttggtata-ttccaatattgtggtcatctttatcccgaatatgaggcagacgtact 884
|||||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||
Sbjct: 8818 agccttggtatatttccaatatggtggtcatctttatccgaaatagagggcagacgtact 8877
Query: 885 ggatatgtactttcttttactttattgaccgcattcactatcggtagcccattggtcccc 944
| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 8878 gtatatgtactttcttttactttattgaccgcattcactatcggtagcgcatt-gtcccc 8936
Query: 945 t-acatttgcgcattta-tgtattncgaatgtt 975
| |||| | |||||||| |||||| ||||||||
Sbjct: 8937 taacatctccgcatttattgtattccgaatgtt 8969
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6129
Number of Sequences: 1807
Number of extensions: 6129
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)