BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZG10RM1.SCF screened BAC_end (846 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1173 805 0.0 >3x_Contig1173 Length = 7454 Score = 805 bits (406), Expect = 0.0 Identities = 453/463 (97%), Gaps = 7/463 (1%) Strand = Plus / Minus Query: 58 taaaactacacacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaatt 117 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3928 taaaactac-cacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaatt 3870 Query: 118 ttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccaggga 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3869 ttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccaggga 3810 Query: 178 caatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgcttt 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3809 caatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgcttt 3750 Query: 238 ctcacattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaangg 297 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 3749 ctcacattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaa--g 3692 Query: 298 gnaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatc 357 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3691 ggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatc 3632 Query: 358 tctttacctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcgn 417 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3631 tctttacctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcg- 3573 Query: 418 gatttggagtgcaatccttagatctagggtcattgaagcaggtacggggtcaggttcctt 477 || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 3572 ga--tggagtgcaatcc-tagatctagggtcattgaagcaggtacggggtcaggttcctt 3516 Query: 478 ttctcatgcgtttgccagatctgcaggtcattttttcttatat 520 ||||||||||||||||||||||||||||||||| |||| |||| Sbjct: 3515 ttctcatgcgtttgccagatctgcaggtcatttattctcatat 3473 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 31,986 Number of Sequences: 1807 Number of extensions: 31986 Number of successful extensions: 3116 Number of sequences better than 1.0e-20: 1 length of query: 846 length of database: 10,358,551 effective HSP length: 16 effective length of query: 830 effective length of database: 10,329,639 effective search space: 8573600370 effective search space used: 8573600370 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)