BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZG10RM1.SCF screened BAC_end
         (846 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1173                                                         805   0.0  

>3x_Contig1173 
          Length = 7454

 Score =  805 bits (406), Expect = 0.0
 Identities = 453/463 (97%), Gaps = 7/463 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   taaaactacacacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaatt 117
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3928 taaaactac-cacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaatt 3870

                                                                        
Query: 118  ttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccaggga 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3869 ttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccaggga 3810

                                                                        
Query: 178  caatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgcttt 237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3809 caatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgcttt 3750

                                                                        
Query: 238  ctcacattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaangg 297
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 3749 ctcacattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaa--g 3692

                                                                        
Query: 298  gnaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatc 357
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3691 ggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatc 3632

                                                                        
Query: 358  tctttacctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcgn 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3631 tctttacctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcg- 3573

                                                                        
Query: 418  gatttggagtgcaatccttagatctagggtcattgaagcaggtacggggtcaggttcctt 477
            ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3572 ga--tggagtgcaatcc-tagatctagggtcattgaagcaggtacggggtcaggttcctt 3516

                                                       
Query: 478  ttctcatgcgtttgccagatctgcaggtcattttttcttatat 520
            ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 3515 ttctcatgcgtttgccagatctgcaggtcatttattctcatat 3473


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,986
Number of Sequences: 1807
Number of extensions: 31986
Number of successful extensions: 3116
Number of sequences better than 1.0e-20: 1
length of query: 846
length of database: 10,358,551
effective HSP length: 16
effective length of query: 830
effective length of database: 10,329,639
effective search space: 8573600370
effective search space used: 8573600370
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)