BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG11RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 1540 0.0
>3x_Contig1253
Length = 5628
Score = 1540 bits (777), Expect = 0.0
Identities = 850/866 (98%), Gaps = 7/866 (0%)
Strand = Plus / Plus
Query: 47 acgttttacgttctgcaattgattcacctcagcaactttggatgactggaaactcaacaa 106
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2791 acgtcttacgttctgcaattgattcacctcagcaactttggatgactggaaactcaacaa 2850
Query: 107 gtaagggagttcatgaaacctgatagcagatgtagcaaagtggcccaaagtatttgctaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2851 gtaagggagttcatgaaacctgatagcagatgtagcaaagtggcccaaagtatttgctaa 2910
Query: 167 aaccattcgaacatatccatccgtctgaggagactgacatattttgttcaatcttggcaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2911 aaccattcgaacatatccatccgtctgaggagactgacatattttgttcaatcttggcaa 2970
Query: 227 aatataatcgacaaaaacattagcgttagtgtggtaaatagtttcggtgataagcaaaag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2971 aatataatcgacaaaaacattagcgttagtgtggtaaatagtttcggtgataagcaaaag 3030
Query: 287 ttgagcagtaaccttaattgctagagccttcacattggaattttcatcaaaaaccataaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3031 ttgagcagtaaccttaattgctagagccttcacattggaattttcatcaaaaaccataaa 3090
Query: 347 cataacaaacggaagcactcgatctaatttattggtatctgatatatattgactcaatat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3091 cataacaaacggaagcactcgatctaatttattggtatctgatatatattgactcaatat 3150
Query: 407 taatatcatttctaagcaacgttctttattctttggattgattaggtttcgaaggcaatg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3151 taatatcatttctaagcaacgttctttattctttggattgattaggtttcgaaggcaatg 3210
Query: 467 caagagagttgcgagaaacaaaagtgcgctttgattttgtacagactcgccgctcatagt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3211 caagagagttgcgagaaacaaaagtgcgctttgattttgtacagactcgccgctcatagt 3270
Query: 527 gctgaatttctgtaatttaatctggcccactccatttatcataattgtatcagtaacaaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3271 gctgaatttctgtaatttaatctggcccactccatttatcataattgtatcagtaacaaa 3330
Query: 587 tgacagctcatccccgtcaattatgagatcagatttattaagaggatactcaccagtgat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3331 tgacagctcatccccgtcaattatgagatcagatttattaagaggatactcaccagtgat 3390
Query: 647 acatattttggagaaatctttgaatattttagtgacggtggtatcaagatctcttttacg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3391 acatattttggagaaatctttgaatattttagtgacggtggtatcaagatctcttttacg 3450
Query: 707 ttcttccaaggttaggctcatagttgttttattaccatttgatagacctgccggctgtac 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3451 ttcttccaaggttaggctcatagttgttttattaccatttgatagacctgccggctgtac 3510
Query: 767 catattcctanntatactcat-aataaaagagtagaatggttcttggaaaaaagtaacct 825
|||||||||| |||||||| ||||||||||||||||| |||| | |||||||||| ||
Sbjct: 3511 catattcctata-atactcataaataaaagagtagaatgtttctggaaaaaaagtaa-ct 3568
Query: 826 ttgtattttggaaagtaaggggtcttgcactaagtctatcctctgggattcaaagcaatc 885
||||| |||||||||||| || |||||||||||||||||||||| ||||||| |||||||
Sbjct: 3569 ttgta-tttggaaagtaa-ggttcttgcactaagtctatcctct-ggattcagagcaatc 3625
Query: 886 atgtcttaagattagcgattgcnaaa 911
||||| |||||||||||||||| |||
Sbjct: 3626 atgtc-taagattagcgattgcaaaa 3650
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6983
Number of Sequences: 1807
Number of extensions: 6983
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)