BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG12FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1003 0.0
>3x_Contig1698
Length = 21001
Score = 1003 bits (506), Expect = 0.0
Identities = 630/660 (95%), Gaps = 9/660 (1%)
Strand = Plus / Plus
Query: 86 tggaaagaaatatctgaccaggctatgtggcttggtaacaatatggattctatgcattct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10303 tggaaagaaatatctgaccaggctatgtggcttggtaacaatatggattctatgcattct 10362
Query: 146 atggaaactgagaacagttttggagaattcaaagctgaagattttctttaaattagtacc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10363 atggaaactgagaacagttttggagaattcaaagctgaagattttctttaaattagtacc 10422
Query: 206 ttaatatattccagagttctatgcatttaatttatatatgtaaattaaggaacgattatc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10423 ttaatatattccagagttctatgcatttaatttatatatgtaaattaaggaacgattatc 10482
Query: 266 aaatattcatcttatgcgaaggattttcatgtttggtcttatttacaaattcttttggca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10483 aaatattcatcttatgcgaaggattttcatgtttggtcttatttacaaattcttttggca 10542
Query: 326 gcattaagttcgtcgtggtccatccaatccgatattctttcatcctcctgagcaataata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10543 gcattaagttcgtcgtggtccatccaatccgatattctttcatcctcctgagcaataata 10602
Query: 386 actctacgtgtggacatttccagattattgactagctgttgtttatcaacaagcatgtta 445
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10603 actctacgtgtggacaattccagattattgactagctgttgtttatcaacaagcatgtta 10662
Query: 446 cggaagctcttattatttttggtattcttcaaccaagtattntcactttcggctaagttc 505
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10663 cggaagctcttattatttttggtattcttcaaccaagtattttcactttcggctaagttc 10722
Query: 506 ttttagaggctattttttttcacagtcaccatatgccagcgatgcataaccagatattta 565
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10723 tttaagaggcta-tttttttcacagtcaccatatgccagcgatgcataaccagatattaa 10781
Query: 566 caatgnttcaccaccgttaatttattgggatacgtaacaaaatttcttgggatcaaagtc 625
||||| ||||||||||| || ||| | ||||||| |||||||||||| ||||||| |||
Sbjct: 10782 caatggttcaccaccgtcaa-ttagttggatacggtacaaaatttctt-ggatcaaggtc 10839
Query: 626 ttcaaacggatttgccagttaaggagaattttgcatatttcattaccctttcaaagc-at 684
||||||||||| ||| || |||||||||||||||||| ||||||| || |||||||| ||
Sbjct: 10840 ttcaaacggatatgcaag-taaggagaattttgcata-ttcattaaccattcaaagcaat 10897
Query: 685 tgttagcttttgaataaattggagaatagctggccgctttaaaacccatgttgattgtct 744
||||||| | ||| | |||| |||| ||||||| ||||| |||||||||||||||||||
Sbjct: 10898 tgttagc-tctgagt-aatttgagatcagctggcagcttt-aaacccatgttgattgtct 10954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9454
Number of Sequences: 1807
Number of extensions: 9454
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)