BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG12RM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig801 1292 0.0
>3x_Contig801
Length = 2608
Score = 1292 bits (652), Expect = 0.0
Identities = 723/739 (97%), Gaps = 6/739 (0%)
Strand = Plus / Plus
Query: 49 acgtcgagtgatttgatacctgctgtgtgtaccaggattttttcggaccagttttgtaat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 acgtcgagtgatttgatacctgctgtgtgtaccaggattttttcggaccagttttgtaat 184
Query: 109 tgttttgtttccaatttgaggcccctgtcaaaaagctcattattccttatctcgaacgga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgttttgtttccaatttgaggcccctgtcaaaaagctcattattccttatctcgaacgga 244
Query: 169 acggaattagtgatgtcccatgtaattaaatgaccatctgttggtgcaatcagaagtttc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acggaattagtgatgtcccatgtaattaaatgaccatctgttggtgcaatcagaagtttc 304
Query: 229 aagcaattctgtaacggaatgaaagcaacgttccagatacaacaggtttcatatcttcca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagcaattctgtaacggaatgaaagcaacgttccagatacaacaggtttcatatcttcca 364
Query: 289 tctatgatcaaggtgaaagaattttgctcgttaaagtagtgccatactttcactgaactg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctatgatcaaggtgaaagaattttgctcgttaaagtagtgccatactttcactgaactg 424
Query: 349 tcactgtatactgtagccattatgaaatcgcaagtgtcaccattcaaaaatagcacatcg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcactgtatactgtagccattatgaaatcgcaagtgtcaccattcaaaaatagcacatcg 484
Query: 409 aaatccattatccgaaggtctggattgttcatagaagggattagtttctgtttcaaattc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaatccattatccgaaggtctggattgttcatagaagggattagtttctgtttcaaattc 544
Query: 469 acatatggatgagagaattgatcattcaattcccataagaatagctcttcccttgcacta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acatatggatgagagaattgatcattcaattcccataagaatagctcttcccttgcacta 604
Query: 529 cacgtaatgaanaaattgtcacagatgaatttgcatcgttgtaagccggacacatgagat 588
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cacgtaatgaaaaaattgtcacagatgaatttgcatcgttgtaagccggacacatgagat 664
Query: 589 ttcagagtccagaaattttgaatagctccagtttctgaattgatagaagacaatttaact 648
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 665 ttcagagtccagaaattttgaatagctccggtttctgaattgatagaagacaatttaact 724
Query: 649 gttgtgtcttctgatcccagt-attaatagtaggtttttcttacaatagtttgagcgtta 707
||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||
Sbjct: 725 gttgtgtcttctgat-ccagtaataaatagtaggttttccttacaatagtttgagcgttt 783
Query: 708 tcggaatgagatattcctttatttccttgccatgagatcccattttttaaagctccttgg 767
||||||||||||| ||| |||||||| | ||||||| | ||||||||||||||||| |||
Sbjct: 784 tcggaatgagata-tcccttatttcccttccatgag-ttccattttttaaagctcc-tgg 840
Query: 768 atatttgccctttgggtat 786
|||||| |||||||||||
Sbjct: 841 gtatttg-cctttgggtat 858
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8231
Number of Sequences: 1807
Number of extensions: 8231
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)