BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH01FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig726 971 0.0
>3x_Contig726
Length = 2931
Score = 971 bits (490), Expect = 0.0
Identities = 548/566 (96%), Gaps = 1/566 (0%)
Strand = Plus / Plus
Query: 90 ggtacttgctggaacgtgtcaatccacagacatttcatcctattctgattattgttcact 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1622 ggtacttgctggaacgtgtcaatccacagacatttcatcctattctgattattgttcact 1681
Query: 150 aattgtaccgcgaactttgtcttgccaattcctggaggtccgtaaacctcgtagatactc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1682 aattgtaccgcgaactttgtcttgccaattcctggaggtccgtaaacctcgtagatactc 1741
Query: 210 tgtggttggaatccgtcattcaatgaatcgtctaaactctcaatgccacttcgtacatga 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1742 tgtggttggaatccgtcattcaatgaatcgtctaaactctcaatgccacttcgtacatga 1801
Query: 270 tctgcacgcgcttgtatcagttgagacaaaggtacaccaaatgacattagaatgctatca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1802 tctgcacgcgcttgtatcagttgagacaaaggtacaccaaatgacattagaatgctatca 1861
Query: 330 actaatcaccaaacgcgtccacagtttctcctggttcttcaagcctttcaagactatgta 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1862 actaatcaccaaacgcgtccacagtttctcctggttcttcaagcctttcaagactatgta 1921
Query: 390 taactagccttttaaatccgcataattcacctttaggtgtaactaaaaaatgtcatcaag 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1922 taactagccttttaaatccgcataattcacctttaggtgtaactaaaaaatgtcatcaag 1981
Query: 450 tccgtagacaactcagctcaataatgtttgttttatttaccaggtttttgctgtgattat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1982 tccgtagacaactcagctcaataatgtttgttttatttaccaggtttttgctgtgattat 2041
Query: 510 gttatttcaaaatattaaataggacaagattagagggagtaataatacttgaatttactc 569
|||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct: 2042 gttattcaaaaatataaaataagaaaagataagagggagtaataatacttgaatttaatc 2101
Query: 570 attgaaagaatttaaaataagaacttgaaagttttttccacgaatcttcttgcctacctc 629
|||||||||||| ||| ||| |||| ||| ||| || |||||||||| |||| |||||||
Sbjct: 2102 attgaaagaattgaaattaaaaactcgaaggttcttcccacgaatctccttgtctacctc 2161
Query: 630 ttggtcggattatttcctacgggtgt 655
|| |||||||||| ||||||||||||
Sbjct: 2162 tt-gtcggattatatcctacgggtgt 2186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,249
Number of Sequences: 1807
Number of extensions: 10249
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)