BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH01RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig716 1195 0.0
>3x_Contig716
Length = 3167
Score = 1195 bits (603), Expect = 0.0
Identities = 759/799 (94%), Gaps = 9/799 (1%)
Strand = Plus / Minus
Query: 106 caatgaacttatataggaacaatacaagactcggcacatgaggtccaagtctttctttaa 165
|||| |||||||||| ||||| |||| |||| |||||| ||||| | ||| |||||
Sbjct: 2794 caattaacttatatattaacaaaacaatactctgcacattttttccaattttttttttaa 2735
Query: 166 ccaaacaacaaatcaaaaagaaaaacacaccactgtatatatatatacatatatatatat 225
|||||||||||||||||||||||||||||| ||||||||||||| | | |||||||
Sbjct: 2734 ccaaacaacaaatcaaaaagaaaaacacacgtgtgtatatatatattgttttttatatat 2675
Query: 226 atacacgcatatgtaatgtaatattagtttgtgaatttatttacttcaaaaccaaccatt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2674 atacacgcatatgtaatgtaatattagtttgtgaatttatttacttcaaaaccaaccatt 2615
Query: 286 ttttcatctctttacagttgacatttgtatctctataaattgtcttttcaaattcgtcca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 ttttcatctctttacagttgacatttgtatctctataaattgtcttttcaaattcgtcca 2555
Query: 346 aagtctgtaagaaaacagcagaatcattagtttggttacagtttgagaacatactaacac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 aagtctgtaagaaaacagcagaatcattagtttggttacagtttgagaacatactaacac 2495
Query: 406 tgatggcgtggttattgatctcttgacctctttctagtagcatatctttcaagacttgtg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 tgatggcgtggttattgatctcttgacctctttctagtagcatatctttcaagacttgtg 2435
Query: 466 atagttctttatccgagaacagtgtggcccacttctcagccagggtgtagaaatgagggc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2434 atagttctttatccgagaacagtgtggcccacttctcagccagggtgtagaaatgagggc 2375
Query: 526 taattgagtgaagatcgagactagtagcaccagatttaatagcgtttagtactcttggag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2374 taattgagtgaagatcgagactagtagcaccagatttaatagcgtttagtactcttggag 2315
Query: 586 cgaataaatcaggcgggagcaattcgacaaaaggaagaggttcttcaactctagaatctt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 cgaataaatcaggcgggagcaattcgacaaaaggaagaggttcttcaactctagaatctt 2255
Query: 646 cattagattgcgcacccactacagcaagaagatggaccatccaaagtggtaactctagtt 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2254 cattagattgcgcacccactacagcaagaagatggaccatccaaagtggtaactctagtt 2195
Query: 706 atgcatttctcgatattggtctgcctgggtttccctccaaataacccaacccaggaacgt 765
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2194 ttgcatttttcgatattggtctgcctgggtttccctccagataacccaacccaggaacgt 2135
Query: 766 cataagttgaatctacagggaaaatctagtaccatcagcccagtatatcattctatatca 825
||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 2134 cat-agttgaatctacaggg-aaatctagtaccatcag-ccagtatatca-tctatatc- 2080
Query: 826 atagtattgcatctcggncataaatcttaaggcgattctacagaacctgaaaccggcaaa 885
||||||| |||||||| |||||||| |||||||||||| ||| ||| ||||||||||
Sbjct: 2079 atagtatcccatctcgg-cataaatc-taaggcgattctcaggaagctg-aaccggcaaa 2023
Query: 886 aaataaggctggtatttgg 904
| || ||||||||||||||
Sbjct: 2022 atat-aggctggtatttgg 2005
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,308
Number of Sequences: 1807
Number of extensions: 13308
Number of successful extensions: 1957
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)