BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH02FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig532 660 0.0
>3x_Contig532
Length = 2251
Score = 660 bits (333), Expect = 0.0
Identities = 455/479 (94%), Gaps = 13/479 (2%)
Strand = Plus / Plus
Query: 170 accaatcaagaagcttgagtttctcctatatcagatatggcagcagcaggatgaggcagg 229
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 14 accaatcaagaagcttgagtttctcctatatcagatatggcagcagcaggaagaggcagg 73
Query: 230 aagagctcgagggtttctcgctcagctaacaaagcaaccagctataaaatcgatacagac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 aagagctcgagggtttctcgctcagctaacaaagcaaccagctataaaatcgatacagac 133
Query: 290 gagttagacattgaagatgatgaaaaggatcaagagtaccctgnaccagccaatgatgat 349
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 134 gagttagacattgaagatgatgaaaaggatcaagagtaccctggaccagccaatgatgat 193
Query: 350 gattacgatgatgacccagatgctgatatcgaaaacgagggtaaaccatctcgttccaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gattacgatgatgacccagatgctgatatcgaaaacgagggtaaaccatctcgttccaag 253
Query: 410 cgcaaggccgctttgagcacacctgttccagtggtactagcgacaaga-gaaggccttc- 467
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 254 cgcaaggccgcttcgagcacacctgttccagtggtactagcgacaagaggaaggccttca 313
Query: 468 aagagg-aaagag-agaagatttgaacgaatccttaagacag-aactaccgta-ccagtg 523
|||||| |||||| ||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct: 314 aagaggaaaagagaagaagatttgaacgatcccttaagacagaaactaccgtacccagtg 373
Query: 524 gacg-aaacgggtcttcataccc-attgtgaatgacgagta-tcattaccttgagatcca 580
|||| |||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct: 374 gacgaaaacgggtctccatacccaattgtgaatgacgagtattcattacctgaggatcca 433
Query: 581 gaggntgaaacc-agatcacc-agaatgg-gatcttctaaagggaagac-atttgtagt 635
|||| ||||||| |||||||| ||||||| ||||||||| ||||||||| |||||||||
Sbjct: 434 gagggtgaaaccaagatcaccaagaatggtgatcttctagagggaagacaatttgtagt 492
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8471
Number of Sequences: 1807
Number of extensions: 8471
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)