BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH02RM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1269 0.0
>3x_Contig1319
Length = 7600
Score = 1269 bits (640), Expect = 0.0
Identities = 715/730 (97%), Gaps = 8/730 (1%)
Strand = Plus / Plus
Query: 47 taccgactcttatatgggagctaatcggttggttttgttcgttccccttctttctagtta 106
|||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 taccgattcttatattggtgttaatcggttggttttgttcgttccccttctttctagtta 1612
Query: 107 tataagtttgaagtcaattctatcgtctcatagagaagatctctcactattccttacgtg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tataagtttgaagtcaattctatcgtctcatagagaagatctctcactattccttacgtg 1672
Query: 167 tttctaccactttatatcgttcttagcttctttgtaaaagcaaatcaaccaagaaactca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 tttctaccactttatatcgttcttagcttctttgtaaaagcaaatcaaccaagaaactca 1732
Query: 227 tgtgatacacagaattttgtaaacactagctcctttcaatgggacaaagttcgatgcttt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 tgtgatacacagaattttgtaaacactagctcctttcaatgggacaaagttcgatgcttt 1792
Query: 287 gaggtttcattaacttctcatcagtttactcttccaggttcattgtttaccaattaaact 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 gaggtttcattaacttctcatcagtttactcttccaggttcattgtttaccaattaaact 1852
Query: 347 aattgggtaattatctatcatgtgacttgtttgatcatgtgacttgaaaagcaagaggtt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 aattgggtaattatctatcatgtgacttgtttgatcatgtgacttgaaaagcaagaggtt 1912
Query: 407 tacttgggacctttcttgtagtcccttgagaaaacatggtgtcaatg-gctgcctcaacc 465
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1913 tacttgggacctttcttgtagtcccttgagaaaacatggtgtcaatgtgctgcctcaacc 1972
Query: 466 ctcaa-gaaatgatgttggatcgtagtaagtgttctttggtagctcatgctcttgttttt 524
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 ctcaatgaaatgatgtttgatcgtagtaagtgttctttggtagctcatgctcttgttttt 2032
Query: 525 tctatgtgtggtctgcttccttaacgaatctttgagtttaaatatagcagatcatcatga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2033 tctatgtgtggtctgcttccttaacgaatctttgagtttaaatatagcagatcatcatga 2092
Query: 585 aaagttatgtatggctcactacgtaaatcgaagaagagccaacccgaaatcccctgtaag 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2093 aaagttatgtatggctcactacgtaaatcgaagaagagccaacccgaaatcccctgtaa- 2151
Query: 645 gacgagaccataggcaactgtagacaacatgctgttactattgatggtacttttctcttt 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2152 gacgagaccataggcaactgtagacaacatgctgttactattgatggtacttttctcttt 2211
Query: 705 ggcatgtgcttncg-aagtataaga-gtgtacc-ccana-aatcagtcactatactcg-c 759
||||||||||| || |||||||||| ||||||| ||| | |||||||||||||||||| |
Sbjct: 2212 ggcatgtgcttccgaaagtataagaggtgtaccaccagagaatcagtcactatactcgcc 2271
Query: 760 cttaccagag 769
||||||||||
Sbjct: 2272 cttaccagag 2281
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5576
Number of Sequences: 1807
Number of extensions: 5576
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)