BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH03FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 720 0.0
>3x_Contig1781
Length = 20717
Score = 720 bits (363), Expect = 0.0
Identities = 499/528 (94%), Gaps = 14/528 (2%)
Strand = Plus / Minus
Query: 89 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11817 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 11758
Query: 149 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11757 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 11698
Query: 209 cgttggttgctatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11697 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 11638
Query: 269 caggaaagatagcaggttgcaattctgttaccctcaacttatatagncactatatatata 328
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 11637 caggaaagatagcaggttgcaattctgtta-cctcaacttatatagtcactatatatata 11579
Query: 329 tatatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11578 tatatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagt 11519
Query: 389 agcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11518 agcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtg 11459
Query: 449 ccattgaagat-gaattttacagttttccggttaaccatggtgttttggcgaaaattnca 507
|||||| |||| ||||||||||| |||||||| |||| ||||||| ||| ||||| ||
Sbjct: 11458 ccattg-agatggaattttacag-gttccggttcaccaatgtgtttt-gcg-aaattcca 11403
Query: 508 tttggaatttcgaaaggcccagggtacaatcgaaaacggcaaagctttacagcccagaca 567
|||||||||||| || || |||||||||| ||||||||||||| |||| |||||||
Sbjct: 11402 -ttggaatttcgacag--ccgaggtacaatcg-aaacggcaaagctagacag-ccagaca 11348
Query: 568 gcccagacgggggaaccacttgttctggggaacaacccaccatttatt 615
| ||||||||||| ||||| || ||||||| |||||||||||| ||||
Sbjct: 11347 g-ccagacggggggaccac-tggtctgggg-acaacccaccatctatt 11303
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,771
Number of Sequences: 1807
Number of extensions: 14771
Number of successful extensions: 2670
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)