BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH03RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1576 0.0
>3x_Contig1807
Length = 66587
Score = 1576 bits (795), Expect = 0.0
Identities = 857/873 (98%), Gaps = 4/873 (0%)
Strand = Plus / Plus
Query: 46 gcttggcctattaaagcgacgaataatgcaaatatggttaaagaaacttgattcctgtgt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36778 gcttggcctattaaagcgacgaataatgcaaatatggttaaagaaacttgattcctgtgt 36837
Query: 106 aatgtgttaatgtcacttttttgttcagactcttccttctcaatcttatcgttgtcactc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36838 aatgtgttaatgtcacttttttgttcagactcttccttctcaatcttatcgttgtcactc 36897
Query: 166 gtgtctgtttcatcttgcgtgctgggagtatttaactttgcgaatagttttactaattcc 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 36898 gtgtctgtttcatcttgcgtgctgggagtatttaactttgcgaatagttttactaagtcc 36957
Query: 226 ggcgcaaaaaagcttccagctacacctagcacggcagaaaccataaatgccactccctca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36958 ggcgcaaaaaagcttccagctacacctagcacggcagaaaccataaatgccactccctca 37017
Query: 286 tattctgttttccaacccacatttagagttaagaaaataggcataaagtaaaggacttca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37018 tattctgttttccaacccacatttagagttaagaaaataggcataaagtaaaggacttca 37077
Query: 346 cacatgaaaaacgttgaaaggaacatattccaaagtagaatcaaagatgcaattagtctg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37078 cacatgaaaaacgttgaaaggaacatattccaaagtagaatcaaagatgcaattagtctg 37137
Query: 406 ttactaccagcactgaaaaacttcttccaagcgtccagataattcttaggatttctcgca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37138 ttactaccagcactgaaaaacttcttccaagcgtccagataattcttaggatttctcgca 37197
Query: 466 cttttcactggcgggttttccaagacaaacataagaagaacgcagataagtaaaatgata 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37198 cttttcactggcgggttttccaagacaaacataagaagaacgcagataagtaaaatgata 37257
Query: 526 aagctagaagcaaatgtgggtgcattgtaagaggtaatacgatatcctctgactgtaaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37258 aagctagaagcaaatgtgggtgcattgtaagaggtaatacgatatcctctgactgtaaaa 37317
Query: 586 tcgcataatgcaaagagaatagccactaattgtgctaacgccatacatataccagcagat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37318 tcgcataatgcaaagagaatagccactaattgtgctaacgccatacatataccagcagat 37377
Query: 646 gtacgataaattgagaataatttgaagatcgttgttctatccttgcttatagcggtaatg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37378 gtacgataaattgagaataatttgaagatcgttgttctatccttgcttatagcggtaatg 37437
Query: 706 taactatacaccaccgctccagaagacgatgctgccccgcatat-atacgaccaccaagt 764
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 37438 taactatacaccaccgctccagaagacgatgctgccccgcatataatacgaccaccaagt 37497
Query: 765 aacgtgtttaaagagac-cgctcctgcacaggaatataggaaattgcccncgnatgat-a 822
||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 37498 aacgtgtttaaagagacgcgctcctgcacaggaatataggaaattgcccacgaatgataa 37557
Query: 823 aaaataaagaaagatatttacccatttgataga-ccaacttaactagcattatctacgat 881
||||||||||||||| |||||||||||||||| ||||| ||||||||| |||| ||||
Sbjct: 37558 aaaataaagaaagattattacccatttgatagagccaacataactagcaatatcaccgat 37617
Query: 882 taataatgagaaaaatacttgtactgcagcaga 914
| |||||||||||||||||||||||||||||
Sbjct: 37618 aataaatgagaaaaatacttgtactgcagcaga 37650
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6622
Number of Sequences: 1807
Number of extensions: 6622
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)