BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZH04FM1.SCF screened BAC_end (894 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig863 466 e-131 >3x_Contig863 Length = 2811 Score = 466 bits (235), Expect = e-131 Identities = 301/314 (95%), Gaps = 7/314 (2%) Strand = Plus / Plus Query: 87 cgtctaccgttccgccccacaaacaaattaccggcaataacgccgccccatcacgtcggg 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2033 cgtctaccgttccgccccacaaacaaattaccggcaataacgccgccccatcacgtcggg 2092 Query: 147 taacaagtatgtatacaattttcaatttggaactttttttccgaccccctttccctatcg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2093 taacaagtatgtatacaattttcaatttggaactttttttccgaccccctttccctatcg 2152 Query: 207 gcaccctttgctccatttgtccttgatccctgcctaggtggcccctgagtggcttncctg 266 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 2153 gcaccctttgctccatttgtccttgatccctgcctaggtggcccctgagtggcttccctg 2212 Query: 267 cttggtttcctggatgtgatcggactaacggag-agtactcacgaactt-cactttttcc 324 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || Sbjct: 2213 cttggtttcctggatgtgatcggactaacggagaagtactcacgaacttccacttttccc 2272 Query: 325 tggcatcc-gtttcaggaaaaacttttc-atttg-acaagc-atcttctttcta-taagt 379 |||||||| ||| ||||||||||| | | ||||| |||||| |||||||| ||| ||||| Sbjct: 2273 tggcatccggttccaggaaaaactatactatttgaacaagcaatcttcttcctattaagt 2332 Query: 380 aatactacgaaggg 393 |||||||||||||| Sbjct: 2333 aatactacgaaggg 2346 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 39,793 Number of Sequences: 1807 Number of extensions: 39793 Number of successful extensions: 3108 Number of sequences better than 1.0e-20: 1 length of query: 894 length of database: 10,358,551 effective HSP length: 16 effective length of query: 878 effective length of database: 10,329,639 effective search space: 9069423042 effective search space used: 9069423042 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)