BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH04RM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1464 1243 0.0
>3x_Contig1464
Length = 11693
Score = 1243 bits (627), Expect = 0.0
Identities = 674/684 (98%), Gaps = 5/684 (0%)
Strand = Plus / Plus
Query: 48 tgacatgcggatgttgttcacccatagtgtattagttttatctttattagaccgaccaga 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgacatgcggatgttgttcagccatagtgtattagttttatctttattagaccgaccaga 344
Query: 108 gcaacactattagctatagatgtgaaatgattctgttatacgatagtatagataggtaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gcaacactattagctatagatgtgaaatgattctgttatacgatagtatagataggtaca 404
Query: 168 gcttaattaactgttcaacagtgaattcgtaacttgtttagcacatctcatctcatcgca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcttaattaactgttcaacagtgaattcgtaacttgtttagcacatctcatctcatcgca 464
Query: 228 tctcatcgcatcttaaggcttcatttcttttaataaaattttcatgcatgcatttcatac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tctcatcgcatcttaaggcttcatttcttttaataaaattttcatgcatgcatttcatac 524
Query: 288 cacgtgacttcgccatatcataacgtagttcattaacagaatttagataaacatgaggaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cacgtgacttcgccatatcataacgtagttcattaacagaatttagataaacatgaggaa 584
Query: 348 gattgacgtggtgaaaaaagtttcgtttgtttgtcctatacctacagttagccgtgtgct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gattgacgtggtgaaaaaagtttcgtttgtttgtcctatacctacagttagccgtgtgct 644
Query: 408 tggagttgtgctggtactcttccaaaacgccattcttcctattcctgtttatttaggttc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tggagttgtgctggtactcttccaaaacgccattcttcctattcctgtttatttaggttc 704
Query: 468 ctttaggatatgatctttttgtcagaagaaccttcaaagcacgatgaaataagaatttga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctttaggatatgatctttttgtcagaagaaccttcaaagcacgatgaaataagaatttga 764
Query: 528 aagaaaaatgattcanaccgctaaaagaagagagtccaagaagtattatataccactgta 587
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aagaaaaatgattcaaaccgctaaaagaagagagtccaagaagtattatataccactgta 824
Query: 588 tttatctttccacaccangtacggatttctaccaataatcatctgttgaagntaaatatg 647
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 825 tttatctttccacaccaggtacggatttctaccaataatcatctgttgaagtaaaatatg 884
Query: 648 ccagttgaaaaagatttg-aagaagcttattctcta-tgtacgataaaa-tgaagtggaa 704
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 885 ccagttgaaaaagatttgaaagaagcttattctctattgtacgataaaattgaagtggaa 944
Query: 705 aa-gca-tggaattgtacgacaaa 726
|| ||| |||||||||||||||||
Sbjct: 945 aaggcattggaattgtacgacaaa 968
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7845
Number of Sequences: 1807
Number of extensions: 7845
Number of successful extensions: 384
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)