BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH05FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1155 799 0.0
>3x_Contig1155
Length = 6106
Score = 799 bits (403), Expect = 0.0
Identities = 469/487 (96%), Gaps = 3/487 (0%)
Strand = Plus / Minus
Query: 87 ttcaattcaccacacaatttactggcacctggaacttcgatagcgtgttgaccgaatttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5567 ttcaattcaccacacaatttactggcacctggaacttcgatagcgtgttgaccgaatttt 5508
Query: 147 tctgggatttcaccttccaacttggtgacatattcttcgttggcgtaatctggagcgaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5507 tctgggatttcaccttccaacttggtgacatattcttcgttggcgtaatctggagcgaac 5448
Query: 207 tgcttgataacatcgtatgttctccatccgtgagagatatcgatgacatgttgggagtcg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5447 tgcttgataacatcgtatgttctccatccgtgagagatatcgatgacatgttgggagtcg 5388
Query: 267 aagtaaggctcgttcttaccgaaatctttcc-gaatttagcaatagctggttgagagatg 325
|||||||||| || ||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 5387 aagtaaggcttgtccttaccgaaatctctccagaattcagcaatagctggttgagagatg 5328
Query: 326 atcaaagtaccatcaacgtcgaacaaagcagcgttgactcttagaaagattggttgttga 385
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 5327 atcaaagtaccatcaacgtcgaacaaagcagcgttgactcttagagagataggttgttga 5268
Query: 386 gcagtgttagaagcggtagcagcagacattttttctataataattgtaattcttaatgat 445
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5267 gcagtgttagaggcggtagcagcagacattttttctataataattgtaattcttaatgaa 5208
Query: 446 tttggtttgtgatgttcttttagaatatacattttgtagtagaatagggatattcttcaa 505
||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct: 5207 tttggttgttgatgttcttttagaatatacaatttgtagtagaatagggatatactacaa 5148
Query: 506 agtttatgattacttcttgaattcaaattaaccatgattcgatggcctttatttaatttt 565
|||||||||| || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 5147 agtttatgatgac-tcttgaattcaaattaaccatgattcgatggcctttatat-atttt 5090
Query: 566 gtttctg 572
|||||||
Sbjct: 5089 gtttctg 5083
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,500
Number of Sequences: 1807
Number of extensions: 14500
Number of successful extensions: 134
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)