BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH05RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig724 1578 0.0
>3x_Contig724
Length = 2144
Score = 1578 bits (796), Expect = 0.0
Identities = 861/875 (98%), Gaps = 6/875 (0%)
Strand = Plus / Plus
Query: 50 cgataaacttgctgccaaatcatgtgcaatcattgccggttctcaagtaaaatacgcatc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cgataaacttgctgccaaatcatgtgcaatcattgccggttctcaagtaaaatacgcatc 794
Query: 110 cggagcagtattctatccattccaacagaacaatgatatgtactatctcactggctggaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cggagcagtattctatccattccaacagaacaatgatatgtactatctcactggctggaa 854
Query: 170 tgaacctgattctgtcatgataatcgagaaaccaaacaacaatcccgaagatgtagtgct 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tgaacctgattctgtcatgataatcgagaaaccaaacaacaatcccgaagatgtagtgct 914
Query: 230 acatatgatggttcctccaaaggatccttttgctgagaaatgggaagggttccgcaccgg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 acatatgatggttcctccaaaggatccttttgctgagaaatgggaagggttccgcaccgg 974
Query: 290 agttgatggtgttaaagaaatatttaatgctgacgaagcgaccagcaacaaaaatttaga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 agttgatggtgttaaagaaatatttaatgctgacgaagcgaccagcaacaaaaatttaga 1034
Query: 350 gcgctacatatgcaatatcattaggagatgtgattatgtctactttgatcatactaagga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 gcgctacatatgcaatatcattaggagatgtgattatgtctactttgatcatactaagga 1094
Query: 410 tgcaaagaattcgacagctttcttcagcagtttcttctctatgaatgataataatcaaaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 tgcaaagaattcgacagctttcttcagcagtttcttctctatgaatgataataatcaaaa 1154
Query: 470 agagcttacgatattgaacttaatcaaaaatacgaccccttcgagacagttgagacctct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 agagcttacgatattgaacttaatcaaaaatacgaccccttcgagacagttgagacctct 1214
Query: 530 caaaggaattgtagctgagcttagaagtacaaaatctcccgcagaattgcgtatcatgag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 caaaggaattgtagctgagcttagaagtacaaaatctcccgcagaattgcgtatcatgag 1274
Query: 590 gagagccggccaaatttccgggagagcttacaatcaagcgtacgctcgaaggttcagaaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 gagagccggccaaatttccgggagagcttacaatcaagcgtacgctcgaaggttcagaaa 1334
Query: 650 tgaaagaacgttgggatccttcctagaatacaagtttatcgaaggtggttgtgatcgttc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 tgaaagaacgttgggatccttcctagaatacaagtttatcgaaggtggttgtgatcgttc 1394
Query: 710 agcgtatattccagtaatcggaactggggacaacgcattatgcattcattatactagaaa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1395 agcgtatattccagtaatcggaactggggacaacgcattatgcattcattatactagaaa 1454
Query: 770 tgacgatgttatgtttcgacgatgaaaatggngcttgtagatgcagcaagtgccataggt 829
||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 1455 tgacgatgttatg-ttcgacgatg-aaatggtgcttgtagatgcagcaggtgccataggt 1512
Query: 830 ggatactgttctgaaatctcaag-acatgggcacgtatttggtaaa-ttacagatgccca 887
|||||||||||||| |||||||| |||||| || |||| ||||||| |||||||||||||
Sbjct: 1513 ggatactgttctgatatctcaagaacatggcca-gtatctggtaaatttacagatgccca 1571
Query: 888 aaagga-ttatacgaagatgtcctaacggttcaaa 921
||| || |||||||||| ||||||| |||||||||
Sbjct: 1572 aaaagatttatacgaagttgtcctagcggttcaaa 1606
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6145
Number of Sequences: 1807
Number of extensions: 6145
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)