BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZH06FM1.SCF screened BAC_end (1049 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1719 438 e-122 >3x_Contig1719 Length = 15804 Score = 438 bits (221), Expect = e-122 Identities = 272/284 (95%), Gaps = 5/284 (1%) Strand = Plus / Minus Query: 87 cagcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggcgttaa 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 699 cagcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggcgttaa 640 Query: 147 taacagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggcca 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 taacagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggcca 580 Query: 207 atttccgatgattttatccaagcctttttcctttctgtacgcttttgccgatgcacaata 266 ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 atttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgcacaata 520 Query: 267 cattttc-aaaaaattcaaactttggacattttcaatttcatcacttttggaagggcatg 325 || |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 519 caatttcaaaaaaattcaaactttggacaatttcaatttcatcac-tttggaagggcatg 461 Query: 326 ttaaaaggggcaaacttgtaaagggcaactgaagcggtatatat 369 ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 460 -taaaaggggcaaacttg--aaaggcaactgaagcggtatatat 420 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,542 Number of Sequences: 1807 Number of extensions: 11542 Number of successful extensions: 136 Number of sequences better than 1.0e-20: 1 length of query: 1049 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1033 effective length of database: 10,329,639 effective search space: 10670517087 effective search space used: 10670517087 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)