BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZH06FM1.SCF screened BAC_end
         (1049 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1719                                                         438   e-122

>3x_Contig1719 
          Length = 15804

 Score =  438 bits (221), Expect = e-122
 Identities = 272/284 (95%), Gaps = 5/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 87  cagcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggcgttaa 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cagcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggcgttaa 640

                                                                       
Query: 147 taacagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggcca 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 taacagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggcca 580

                                                                       
Query: 207 atttccgatgattttatccaagcctttttcctttctgtacgcttttgccgatgcacaata 266
           |||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgcacaata 520

                                                                       
Query: 267 cattttc-aaaaaattcaaactttggacattttcaatttcatcacttttggaagggcatg 325
           || |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 519 caatttcaaaaaaattcaaactttggacaatttcaatttcatcac-tttggaagggcatg 461

                                                       
Query: 326 ttaaaaggggcaaacttgtaaagggcaactgaagcggtatatat 369
            |||||||||||||||||  || |||||||||||||||||||||
Sbjct: 460 -taaaaggggcaaacttg--aaaggcaactgaagcggtatatat 420


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,542
Number of Sequences: 1807
Number of extensions: 11542
Number of successful extensions: 136
Number of sequences better than 1.0e-20: 1
length of query: 1049
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1033
effective length of database: 10,329,639
effective search space: 10670517087
effective search space used: 10670517087
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)