BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH07RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1453 1314 0.0
>3x_Contig1453
Length = 8444
Score = 1314 bits (663), Expect = 0.0
Identities = 689/699 (98%)
Strand = Plus / Minus
Query: 47 tcaatgattgcgtaaattgcttgttttcatccaaaattcatgttgataatattgacggcc 106
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 tcaatgattgtgtaaattgtttgttttcatccaaaattcatgttgataatattgacggcc 2461
Query: 107 aaaatagtaatcatgaaaataattctgaaaaactatcaacgaaaggtgtcagcgaacgat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2460 aaaatagtaatcatgaaaataattctgaaaaactatcaacgaaaggtgtcagcgaacgat 2401
Query: 167 aagaataagtcacgtgcgcaagttttacaattgtaatctatttagacgtgagtatgtatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2400 aagaataagtcacgtgcgcaagttttacaattgtaatctatttagacgtgagtatgtatt 2341
Query: 227 gtcgttagatgagatttcgaggtaggatgttcttcaaggtaaattcttcagacaccggtt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2340 gtcgttagatgagatttcgaggtaggatgttcttcaaggtaaattcttcagacaccggtt 2281
Query: 287 catccaatatggcaaggtctttgtctgggaagattttggggaaaaacaatgataaaatga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2280 catccaatatggcaaggtctttgtctgggaagattttggggaaaaacaatgataaaatga 2221
Query: 347 cggtgagtaacaacacgataggaaaaccaatcgcaccttttgtgtttgttattgcgaatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 cggtgagtaacaacacgataggaaaaccaatcgcaccttttgtgtttgttattgcgaatt 2161
Query: 407 cagcaacgaatccaactaaactgagtgatataaatagtaataaactcttggttgagacag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 cagcaacgaatccaactaaactgagtgatataaatagtaataaactcttggttgagacag 2101
Query: 467 tgttcaaagtactatccttgcttttctttttaggatctgtgaatacaaaccatattcggt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 tgttcaaagtactatccttgcttttctttttaggatctgtgaatacaaaccatattcggt 2041
Query: 527 gaacaattgtatttgagacaagaccctgaattcccattatgaagaacaagcctgagagta 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 gaacaattgtatttgagacaagaccctgaattcccattatgaagaacaagcctgagagta 1981
Query: 587 ccgnctgcngaatgangcctaagcatattaagaacggtcttgtcattgttcctaagatca 646
||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 ccgcctgcggaatgaggcctaagcatattaagaacggtcttgtcattgttcctaagatca 1921
Query: 647 tgagtccctgtacagtatttgtgaatctctgcttcgcgcatcgtatcaaattaccatcgt 706
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1920 tgagtccctgtacagtatttgtgaatctctgctccgcgcatcgtatcacattaccatcgt 1861
Query: 707 cattacggactancagggattgtgtgtgtagtggagcct 745
||| |||||||| || |||||||||||||||||||||||
Sbjct: 1860 catcacggactagcaaggattgtgtgtgtagtggagcct 1822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,250
Number of Sequences: 1807
Number of extensions: 12250
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)