BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZH08FM1.SCF screened BAC_end (946 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig254 615 e-176 >3x_Contig254 Length = 2235 Score = 615 bits (310), Expect = e-176 Identities = 362/373 (97%), Gaps = 5/373 (1%) Strand = Plus / Plus Query: 167 gtagaatcattgtggcaactcctggtagatttttggaattattagaaaggaacccagatc 226 |||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 26 gtagaatcattgtg-caactcctggtagatttttgga-ttattagaaag-aacccagatc 82 Query: 227 tgattcctaggtttgccaaaattgacactttagttcttgatgaggcagacagactactac 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83 tgattcctaggtttgccaaaattgacactttagttcttgatgaggcagacagactactac 142 Query: 287 aagacggacatttcgatgaattcgagaaaattttgaagttattanggaaagcccgaaaaa 346 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 143 aagacggacatttcgatgaattcgagaaaattttgaagttattagggaaagcccggaaaa 202 Query: 347 ttaaaacaagtatcgacggaaagccaactggaagtggatggcaaacaatgattttctctg 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 203 ttaaaacaagtatcgacggaaagccaactggaagtggatggcaaacaatgattttctctg 262 Query: 407 ccacattttcatttggatcttttcacgaaattagataaaacttcatggaaaatcctttaa 466 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 263 ccacattttca-ttggatcttttcacgaaattagataaaacttcatggaaaatccttaaa 321 Query: 467 acagcccgtgggggagaacattgaaatggaacaagttttaaatcatttgatgaaaaaaat 526 |||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct: 322 acagccggt-ggggagaacaatgaaatggaacaagttttaaatcatttgatgaagaaaat 380 Query: 527 tcaattcaaatct 539 ||||||||||||| Sbjct: 381 tcaattcaaatct 393 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,266 Number of Sequences: 1807 Number of extensions: 10266 Number of successful extensions: 85 Number of sequences better than 1.0e-20: 1 length of query: 946 length of database: 10,358,551 effective HSP length: 16 effective length of query: 930 effective length of database: 10,329,639 effective search space: 9606564270 effective search space used: 9606564270 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)