BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZH08RM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1136                                                        1110   0.0  

>3x_Contig1136 
          Length = 5035

 Score = 1110 bits (560), Expect = 0.0
 Identities = 707/745 (94%), Gaps = 12/745 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   ctgtactaaacgagtgaaaaacttactggaccatacgacttgttcagaacattttacaac 116
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 ctgtactaaaagagtgaaaaacttactggaccatacgacttgttcagaacattttacaac 1694

                                                                        
Query: 117  aacggcattaccagtgaatatcgaagcaactataggccctaataagttgtggaaaggata 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 aacggcattaccagtgaatatcgaagcaactataggccctaataagttgtggaaaggata 1634

                                                                        
Query: 177  attccaagaaacaatcgccccaacaacacccaatggctcgtaacggacctctgcaccttt 236
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1633 attccaagagacaatcgccccaacaacacccaatggctcgtaacggacctctgcaccttt 1574

                                                                        
Query: 237  gtaccatttcatgaagaagttagtgggtccagggcgggc-gcttggcttcaaaacatctt 295
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1573 gtaccatttcatgaagaagttagtgggtccagggcgggccgcttggcttcaaaacatctt 1514

                                                                        
Query: 296  ctccatgttcaataatccactgaatcttttctaatgtaaccagaatctcacccattgaag 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 ctccatgttcaataatccactgaatcttttctaatgtaaccagaatctcacccattgaag 1454

                                                                        
Query: 356  catctaacatggttttccctgagtccctacatgcgacgcgagcaatggcttcttgattct 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 catctaacatggttttccctgagtccctacatgcgacgcgagcaatggcttcttgattct 1394

                                                                        
Query: 416  ccaagatgaaatttttcaaagataatagaacttgcagcctttcctttaatgaagtcttgg 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 ccaagatgaaatttttcaaagataatagaacttgcagcctttcctttaatgaagtcttgg 1334

                                                                        
Query: 476  cccattgtaattgtgctctttctgccaatagaacgatttcatcgatatcagtatcagaca 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 cccattgtaattgtgctctttctgccaatagaacgatttcatcgatatcagtatcagaca 1274

                                                                        
Query: 536  tagacttaaatgaaccctagaaattg-cctgtcgctggacaataagattggatcatatgg 594
            |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1273 tagacttaaatgaacc-taggaattggcctgtcgctggacaataagattggatcatatgg 1215

                                                                        
Query: 595  ngntgctctnggttataaacagagcaagg-aacattcgctttaccttncaatgnttgtga 653
             | |||||| ||||||||||||||||||| ||||| |||||  |||| ||||| ||||||
Sbjct: 1214 ggttgctctgggttataaacagagcaaggaaacatccgcttacccttccaatgtttgtga 1155

                                                                        
Query: 654  gctgcatcagggatttatagttttgaactggaacgcagataggcagttttgcttttactt 713
            |||||||||||||| ||||| ||||||||||| ||||||| ||||| |||||| |||| |
Sbjct: 1154 gctgcatcagggatatatag-tttgaactggaccgcagat-ggcag-tttgctcttac-t 1099

                                                                        
Query: 714  gaacccccattggttaatgaaaaataattcggaattaacccaccaccgagagttccagaa 773
            |||| ||||||| | ||||  |||||| |||  ||||| ||| || ||||||||||||||
Sbjct: 1098 gaacacccattgataaatg--aaataaatcgagattaaaccaacaacgagagttccagaa 1041

                                     
Query: 774  attggaaacgaacattttcattgac 798
             |  |||||||||||| ||| ||||
Sbjct: 1040 gt--gaaacgaacattctcactgac 1018


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7281
Number of Sequences: 1807
Number of extensions: 7281
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)