BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZH08RM1.SCF screened BAC_end (941 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1136 1110 0.0 >3x_Contig1136 Length = 5035 Score = 1110 bits (560), Expect = 0.0 Identities = 707/745 (94%), Gaps = 12/745 (1%) Strand = Plus / Minus Query: 57 ctgtactaaacgagtgaaaaacttactggaccatacgacttgttcagaacattttacaac 116 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 ctgtactaaaagagtgaaaaacttactggaccatacgacttgttcagaacattttacaac 1694 Query: 117 aacggcattaccagtgaatatcgaagcaactataggccctaataagttgtggaaaggata 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 aacggcattaccagtgaatatcgaagcaactataggccctaataagttgtggaaaggata 1634 Query: 177 attccaagaaacaatcgccccaacaacacccaatggctcgtaacggacctctgcaccttt 236 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 attccaagagacaatcgccccaacaacacccaatggctcgtaacggacctctgcaccttt 1574 Query: 237 gtaccatttcatgaagaagttagtgggtccagggcgggc-gcttggcttcaaaacatctt 295 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1573 gtaccatttcatgaagaagttagtgggtccagggcgggccgcttggcttcaaaacatctt 1514 Query: 296 ctccatgttcaataatccactgaatcttttctaatgtaaccagaatctcacccattgaag 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1513 ctccatgttcaataatccactgaatcttttctaatgtaaccagaatctcacccattgaag 1454 Query: 356 catctaacatggttttccctgagtccctacatgcgacgcgagcaatggcttcttgattct 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 catctaacatggttttccctgagtccctacatgcgacgcgagcaatggcttcttgattct 1394 Query: 416 ccaagatgaaatttttcaaagataatagaacttgcagcctttcctttaatgaagtcttgg 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 ccaagatgaaatttttcaaagataatagaacttgcagcctttcctttaatgaagtcttgg 1334 Query: 476 cccattgtaattgtgctctttctgccaatagaacgatttcatcgatatcagtatcagaca 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 cccattgtaattgtgctctttctgccaatagaacgatttcatcgatatcagtatcagaca 1274 Query: 536 tagacttaaatgaaccctagaaattg-cctgtcgctggacaataagattggatcatatgg 594 |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 1273 tagacttaaatgaacc-taggaattggcctgtcgctggacaataagattggatcatatgg 1215 Query: 595 ngntgctctnggttataaacagagcaagg-aacattcgctttaccttncaatgnttgtga 653 | |||||| ||||||||||||||||||| ||||| ||||| |||| ||||| |||||| Sbjct: 1214 ggttgctctgggttataaacagagcaaggaaacatccgcttacccttccaatgtttgtga 1155 Query: 654 gctgcatcagggatttatagttttgaactggaacgcagataggcagttttgcttttactt 713 |||||||||||||| ||||| ||||||||||| ||||||| ||||| |||||| |||| | Sbjct: 1154 gctgcatcagggatatatag-tttgaactggaccgcagat-ggcag-tttgctcttac-t 1099 Query: 714 gaacccccattggttaatgaaaaataattcggaattaacccaccaccgagagttccagaa 773 |||| ||||||| | |||| |||||| ||| ||||| ||| || |||||||||||||| Sbjct: 1098 gaacacccattgataaatg--aaataaatcgagattaaaccaacaacgagagttccagaa 1041 Query: 774 attggaaacgaacattttcattgac 798 | |||||||||||| ||| |||| Sbjct: 1040 gt--gaaacgaacattctcactgac 1018 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7281 Number of Sequences: 1807 Number of extensions: 7281 Number of successful extensions: 39 Number of sequences better than 1.0e-20: 1 length of query: 941 length of database: 10,358,551 effective HSP length: 16 effective length of query: 925 effective length of database: 10,329,639 effective search space: 9554916075 effective search space used: 9554916075 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)