BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH09RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 1398 0.0
>3x_Contig1713
Length = 18539
Score = 1398 bits (705), Expect = 0.0
Identities = 826/858 (96%), Gaps = 7/858 (0%)
Strand = Plus / Minus
Query: 53 ctttctttgaatacgcattacattgacctaacgaagtatttcaccgaagcttctcatgtc 112
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8269 ctttctttgaatacgcattacatcgacctaacgaagtatttcaccgaagcttctcatgtc 8210
Query: 113 acggatatgattcatctgggtcatcattacgatggaaggttcttccgtggtggattatct 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8209 acggatatgattcatctgggtcatcattacgatggaaggttcttccgtggtggattatct 8150
Query: 173 catagtgaagttagagccagattggatgccattattagagcctggttgcatttcactgtt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8149 catagtgaagttagagccagattggatgccattattagagcctggttgcatttcactgtt 8090
Query: 233 tccaatgatcttactgcatggttagctcatggtactttgtacggttggctttacaacgga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8089 tccaatgatcttactgcatggttagctcatggtactttgtacggttggctttacaacgga 8030
Query: 293 ttggcgttcacttgggatggtgatcatgacgttcaaatgcctattgctgatttaaaccgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8029 ttggcgttcacttgggatggtgatcatgacgttcaaatgcctattgctgatttaaaccgt 7970
Query: 353 atggcgaaaaaatttaaccaaaccgttatcgttgaggatcctactagaggaaacggtaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7969 atggcgaaaaaatttaaccaaaccgttatcgttgaggatcctactagaggaaacggtaga 7910
Query: 413 tatttcctcgacgtgggtaccttcatcactgctaggaacaaggggaacggtttgaataac 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7909 tatttcctcgacgtgggtaccttcatcactgctaggaacaaggggaacggtttgaataac 7850
Query: 473 attgacgccagattcattgacgttgattctggtttgtacgttgatatcaccggtctttct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7849 attgacgccagattcattgacgttgattctggtttgtacgttgatatcaccggtctttct 7790
Query: 533 gtatcttatgaaccaattgccgatagattcgaatggttagtccacanatattttaatgat 592
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7789 gtatcttatgaaccaattgccgatagattcgaatggttagtccacaaatattttaatgat 7730
Query: 593 ttgaaaactgacccagaacatatgccattctacgangaccctaacgttgttccttacgtc 652
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 7729 ttgaaaactgacccagaacatatgccattctacgaggaccctaacgttgttcctaacgtc 7670
Query: 653 tcagggctcagcgttctggattagattg-agtatgatttggcatttaattagaccggagg 711
|||||||||||||||||||| ||||||| ||||||| |||||||| ||| |||||| |||
Sbjct: 7669 tcagggctcagcgttctgga-tagattgaagtatgaattggcattaaataagaccgaagg 7611
Query: 712 acaattgacaagaagcaggcatgagtatttgtctcgcaacatc-nagaaagagattag-a 769
||||||||||||| |||||||||||||||||||| |||||| |||||||||| || |
Sbjct: 7610 acaattgacaagagcaaggcatgagtatttgtctcgaaacatcaaagaaagagataagaa 7551
Query: 770 agaactttatcaatcagattcgttaaaggataggtccaacattaataaac-tgcttaagc 828
||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct: 7550 agaactttatcaatcagattcgttaaaggataggtacaacattaataaacatgctcaagc 7491
Query: 829 ttaccattgttgaaataagca-ttccaaactttatttgaattat-ttcactaagggtaac 886
|||| ||||| |||||||||| ||||||||| |||| ||| ||| | |||||||| ||||
Sbjct: 7490 ttacaattgtagaaataagcatttccaaactctattcgaactatctccactaaggttaac 7431
Query: 887 ttttttccctggggttcc 904
|||||||| ||| |||||
Sbjct: 7430 ttttttccatggtgttcc 7413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6037
Number of Sequences: 1807
Number of extensions: 6037
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)