BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH10FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 1174 0.0
>3x_Contig1638
Length = 14042
Score = 1174 bits (592), Expect = 0.0
Identities = 647/662 (97%), Gaps = 4/662 (0%)
Strand = Plus / Plus
Query: 88 ccctctctggttgtcatgtcggagtttgcgctcaattcgtcgtttatacaggaatctatt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9594 ccctctctggttgtcatgtcggagtttgcgctcaattcgtcgtttatacaggaatctatt 9653
Query: 148 ttgtacatagtggattctcttaatctacgccgagattgttgaaaccggacctggatttgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9654 ttgtacatagtggattctcttaatctacgccgagattgttgaaaccggacctggatttgg 9713
Query: 208 ccctcattctttctatacgtgcctttaattggttcgtaacttctgcagctcgtttccacg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9714 ccctcattctttctatacgtgcctttaattggttcgtaacttctgcagctcgtttccacg 9773
Query: 268 attcctcttgcaacatatggttgttcaagtttagggaattgacacgtctaggtagatcgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9774 attcctcttgcaacatatggttgttcaagtttagggaattgacacgtctaggtagatcgt 9833
Query: 328 cgctactttcactaggcgatctgaccctttgaggagtcgtagcatttttagtagatctca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9834 cgctactttcactaggcgatctgaccctttgaggagtcgtagcatttttagtagatctca 9893
Query: 388 gaggtgataaggtagttgctgttaatcttcctctgctaatggacgaggatatgggtgaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9894 gaggtgataaggtagttgctgttaatcttcctctgctaatggacgaggatatgggtgaat 9953
Query: 448 ctgttgacatggtatcggaagtaccgcccgtcagtttactctctaactccttgatcttta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954 ctgttgacatggtatcggaagtaccgcccgtcagtttactctctaactccttgatcttta 10013
Query: 508 aattcttagcgttcaattgatccttcgaatcctgcaattgcctttgtaaattggaaacgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10014 aattcttagcgttcaattgatccttcgaatcctgcaattgcctttgtaaattggaaacgt 10073
Query: 568 atgtctcagactcgttcaagagtttatttacttttggaaagttgtaaattggatttgatt 627
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 10074 atgtctcagactcgttcaagagtttatttac-tttggaaagttgtaaattgga-ttgatt 10131
Query: 628 --agttggantagagatcgttgcgcttccttagccattcttgcctctcttggcctaaatt 685
||||||| ||||||||||||||| ||||||||||||||| |||||||| | ||| ||
Sbjct: 10132 taagttggataagagatcgttgcgctcccttagccattcttgtctctcttgtcttaattt 10191
Query: 686 ggtcacttcatcgtttaaatgtgacattctgtttgatatgtttgtctgttgggtgaaatt 745
| ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 10192 gttcacttcatcgtttaaatgtgacattctgttggatatgtttgtctgtggtgtgaaatt 10251
Query: 746 gc 747
||
Sbjct: 10252 gc 10253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5517
Number of Sequences: 1807
Number of extensions: 5517
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)