BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH10RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig913 1366 0.0
>3x_Contig913
Length = 2857
Score = 1366 bits (689), Expect = 0.0
Identities = 778/797 (97%), Gaps = 8/797 (1%)
Strand = Plus / Plus
Query: 48 atgagtaaacaaaaaagt-tacgattacccgtgatcttccgcaattagtacagctagtat 106
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2033 atgagtaaacaaaaaagtatacgattacccgtgatcttccgcaattagtacagctagtat 2092
Query: 107 gcgaatattttagcacctataaacatcccgttttcattgaattagttcattcgtttaaca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2093 gcgaatattttagcacctataaacatcccgttttcattgaattagttcattcgtttaaca 2152
Query: 167 cataaactcatcgatttcctctttttctttagttttttcatcttttcatgtttagccaat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2153 cataaactcatcgatttcctctttttctttagttttttcatcttttcatgtttagccaat 2212
Query: 227 accgtgtcaagtagggaaaagatgttgaagctttaggaaaaaaaatcgaaactgaggttt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2213 accgtgtcaagtagggaaaagatgttgaagctttaggaaaaaaaatcgaaactgaggttt 2272
Query: 287 aggaaaaagaataggaaactttgagaaacataagactaacagtgagtggtactcatcaat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 aggaaaaagaataggaaactttgagaaacataagactaacagtgagtggtactcatcaat 2332
Query: 347 ccaacttggctcttttgcattgcagcatacgcttcttcctttcgtttacgattgtatact 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 ccaacttggctcttttgcattgcagcatacgcttcttcctttcgtttacgattgtatact 2392
Query: 407 gtgagatcgctaccaggaaacggcaggttttttttctctttcgtgcaatttaataccgtt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2393 gtgagatcgctaccaggaaacggcaggttttttttctctttcgtgcaatttaataccgtt 2452
Query: 467 agcaattaatttaatttattcacatcgatattggctgaatctcactcatattatttactt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2453 agcaattaatttaatttattcacatcgatattggctgaatctcactcatattatttactt 2512
Query: 527 tcagtttgtccaaccactcaactgtctcgagattgctcactttatcgctgaattttaccg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2513 tcagtttgtccaaccactcaactgtctcgagattgctcactttatcgctgaattttaccg 2572
Query: 587 atagtacatttatattacaggcattttttaggttttgttattcctaaagtctgttgtatt 646
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2573 atagtacatttatattacaggcattttttaggttttgttattcct-aagtctgttgtatt 2631
Query: 647 tggttttggtttcgtatttctttctttggatttgacaaaattctaacccatatttacacg 706
|||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||
Sbjct: 2632 tggttttggtttcgtatttcttccttt-gaattgacaaaattctaacccataattacacg 2690
Query: 707 atgtttgagatctgctgctgtcaaaaagtcctttatcaaagggcgaaagtttcttcgtta 766
||| ||||||||||||||||||| || || ||||||||||||||| ||||||||||||||
Sbjct: 2691 atg-ttgagatctgctgctgtcagaaggt-ctttatcaaagggcg-aagtttcttcgtta 2747
Query: 767 ctttcatatagaattcaaatctttttttgcaactgctttgaacactgcggctagaatggg 826
||||||||||| || |||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct: 2748 ctttcatatag-atacaaatcttcttttgcaactgctttgaacactgttgctag-attgg 2805
Query: 827 taacttcaaaggcattg 843
||||| |||||||||||
Sbjct: 2806 taactccaaaggcattg 2822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8740
Number of Sequences: 1807
Number of extensions: 8740
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)