BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH11RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1275 0.0
>3x_Contig1739
Length = 22061
Score = 1275 bits (643), Expect = 0.0
Identities = 715/731 (97%), Gaps = 7/731 (0%)
Strand = Plus / Plus
Query: 48 tacattggaaatattcaaatgtttttttctctggattttagttggttttttttcgacctt 107
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9444 tacattggaaatattcaaatgtttttttctctggattttagttgtttttttttcgacctt 9503
Query: 108 tgacgattttctgtattttttcgaaaagttaatagtcaattttgtcttttactagtatga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9504 tgacgattttctgtattttttcgaaaagttaatagtcaattttgtcttttactagtatga 9563
Query: 168 aatgccaattgtgtcacgtacagagctgacaattaaacttaaatcataattacaggtttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9564 aatgccaattgtgtcacgtacagagctgacaattaaacttaaatcataattacaggtttt 9623
Query: 228 agaatacatatgaaactccccgaatgttttttttattatattgacaaatgacacgacgaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9624 agaatacatatgaaactccccgaatgttttttttattatattgacaaatgacacgacgaa 9683
Query: 288 ggtccaattttttgctatgtaaaaattatatacatttttgatcgatgaagaaaaaaagtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9684 ggtccaattttttgctatgtaaaaattatatacatttttgatcgatgaagaaaaaaagtc 9743
Query: 348 tctagaagtggacgaatttctgggcaaagttctcatggccatcttcagcgctcttaccga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9744 tctagaagtggacgaatttctgggcaaagttctcatggccatcttcagcgctcttaccga 9803
Query: 408 tcttaatatatttatcattttttatgttttccttaatatcgtggtgaagtgctattaagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9804 tcttaatatatttatcattttttatgttttccttaatatcgtggtgaagtgctattaagt 9863
Query: 468 aattatcaaagctttcgaccaactcgatggatttatcctcaaccatcagttggttcatca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9864 aattatcaaagctttcgaccaactcgatggatttatcctcaaccatcagttggttcatca 9923
Query: 528 catgagaataataaggatccacgttaggtctcaatgggacaactggaagatagtctatat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9924 catgagaataataaggatccacgttaggtctcaatgggacaactggaagatagtctatat 9983
Query: 588 ttatgatttgactccaatttttgatcacattgcgggccttgatattttatatc-gtgtct 646
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 9984 ttatgatttgactccaatttttgatcacattgcgggccttgata-tttatatcggtgtct 10042
Query: 647 aaatctggc-acctgccaccgaatattatcagttggttgattggtccctcgtatgat-ac 704
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 10043 aaatctggcaacctgccaccgaatatatccagttggttgattggtccctcgtatgataac 10102
Query: 705 anatcacgtatt-acataagaattgng-tttcattcatncatagnaaacaagattca-ct 761
| |||||||||| |||||||| ||| | |||||||||| ||||| |||||||||||| ||
Sbjct: 10103 aaatcacgtattaacataagatttgtgttttcattcatccataggaaacaagattcacct 10162
Query: 762 tggaaaattag 772
|||||||||||
Sbjct: 10163 tggaaaattag 10173
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7550
Number of Sequences: 1807
Number of extensions: 7550
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)