BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZH12FM1.SCF screened BAC_end
(1065 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1327 460 e-129
>3x_Contig1327
Length = 7237
Score = 460 bits (232), Expect = e-129
Identities = 360/396 (90%), Gaps = 5/396 (1%)
Strand = Plus / Plus
Query: 87 caattacgatctagtagtgcaggcactattgctcatcaatgaatctttgatgaaaataca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4660 caattacgatctagtagtgcaggcactattgctcatcaatgaatctttgatgaaaataca 4719
Query: 147 cctcggagtgaagtgtaacattaatatgatgtggtgggtacgtaattcctacccgttaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4720 cctcggagtgaagtgtaacattaatatgatgtggtgggtacgtaattcctacccgttaca 4779
Query: 207 agcactttccatagtgctaactcatattctaaagaaaccaacttcaagaatgaatttcga 266
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4780 agcactttccatagtgctaactcatattctaaagaaaccaactacaagaatgaatttcga 4839
Query: 267 aaatctaccgtttggtttttgaatttac-aaacaccccgaacataaattatttagcgttt 325
|||||||||| |||| || ||||| ||| |||||||| | |||||||||||| |||||||
Sbjct: 4840 aaatctaccggttgg-ttatgaatatacaaaacacccag-acataaattattcagcgttt 4897
Query: 326 gatatcagaaaagaaatggtcgtacaaactatggacccctttca-accatcaaaataacc 384
||||||||| | ||||||||||| ||||||||||| || |||| |||||||| | ||||
Sbjct: 4898 gatatcagagaggaaatggtcgtcaaaactatggacgccattcagaccatcaagagaacc 4957
Query: 385 tggcccaaagttatgcaaaaactattcaaaaaaatttgccaattgaaagaaatttttttt 444
||||| || || |||||| || |||| |||| |||||| ||||||||| ||| | ||||
Sbjct: 4958 tggccaaaggtagtgcaaagacgattcgaaaagatttgcgaattgaaag-aatatgtttt 5016
Query: 445 tagcccaaaaaggaaacatttaacgacttaacaaac 480
||||| | ||||||||| | ||||||| |||||||
Sbjct: 5017 tagccagagaaggaaacaatcaacgactcaacaaac 5052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,455
Number of Sequences: 1807
Number of extensions: 19455
Number of successful extensions: 247
Number of sequences better than 1.0e-20: 1
length of query: 1065
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1049
effective length of database: 10,329,639
effective search space: 10835791311
effective search space used: 10835791311
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)