BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZH12RM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1692                                                         973   0.0  

>3x_Contig1692 
          Length = 16448

 Score =  973 bits (491), Expect = 0.0
 Identities = 596/624 (95%), Gaps = 6/624 (0%)
 Strand = Plus / Minus

                                                                        
Query: 42   gcttactattgactaccccatttattaacttgatggaatcaggacctagaagtcttatgt 101
            |||||||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 6059 gcttactagtgactagcccatttaagaacttgatggaatcaggacctagaagtcttatgt 6000

                                                                        
Query: 102  atgatttattttcaactcgacatgattcaaaccggaactgggtagcttctttaaccgatg 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5999 atgatttattttcaactcgacatgattcaaaccggaactgggtagcttctttaaccgatg 5940

                                                                        
Query: 162  agaaatatcgtagaaatgatctcatatagattatatttgaaggcccttgaatatttctt- 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    | 
Sbjct: 5939 agaaatatcgtagaaatgatctcatatagattatatttgaaggcccttgaagatgcaatc 5880

                                                                        
Query: 221  agaaatcgggcagtgaaattggtatagtcagtaagtttcctgagctatacgatgttttcc 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5879 agaaatcgggcagtgaaattggtatagtcagtaagtttcctgagctatacgatgttttcc 5820

                                                                        
Query: 281  tatgctctttaccctatttacttgttaatgacaaattggttatccaaatggattatcacc 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5819 tatgctctttaccctatttacttgttaatgacaaattggttatccaaatggattatcacc 5760

                                                                        
Query: 341  aattttcaaataaaatgtatgtgacaatgatatatttttaaaggtatactacattacagg 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5759 aattttcaaataaaatgtatgtgacaatgatatatttttaaaggtatactacattacagg 5700

                                                                        
Query: 401  atgtgatgggaatcaaaaggggtttggcatggatgggccaaaacagatggagaagaaccg 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5699 atgtgatgggaatcaaaaggggtttggcatggatgggccaaaacagatggagaagaaccg 5640

                                                                        
Query: 461  atgagagcggttttgtaaacgaacccgttggtgtataattgtataagagtgtatactatt 520
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5639 atgagagcggttttgtaaacgaacccgttggtgtataattgtataagagtgtatacta-t 5581

                                                                        
Query: 521  tttttttctaaatcttgaatataaaagttgttgtacttatttccttttatttaatataaa 580
            |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| 
Sbjct: 5580 tttttttctaaatcttgaatat-aaagttgttgtacttattt-cttttatttaatataat 5523

                                                                        
Query: 581  tggaaaatgatgttggnggnnggtaattagat-tttaaaaaaaaattaaagagcccacgc 639
            |||||||||||||| |  |  | |||| |||| |  |||||||||| ||||||| || ||
Sbjct: 5522 tggaaaatgatgtt-gttgttgttaataagatataaaaaaaaaaataaaagagcacaagc 5464

                                    
Query: 640  tgggataagaagtcttaccgaaca 663
            |||||||||| |||||||||||||
Sbjct: 5463 tgggataagaggtcttaccgaaca 5440


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,875
Number of Sequences: 1807
Number of extensions: 10875
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)