BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZH12RM1.SCF screened BAC_end (942 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1692 973 0.0 >3x_Contig1692 Length = 16448 Score = 973 bits (491), Expect = 0.0 Identities = 596/624 (95%), Gaps = 6/624 (0%) Strand = Plus / Minus Query: 42 gcttactattgactaccccatttattaacttgatggaatcaggacctagaagtcttatgt 101 |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 6059 gcttactagtgactagcccatttaagaacttgatggaatcaggacctagaagtcttatgt 6000 Query: 102 atgatttattttcaactcgacatgattcaaaccggaactgggtagcttctttaaccgatg 161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5999 atgatttattttcaactcgacatgattcaaaccggaactgggtagcttctttaaccgatg 5940 Query: 162 agaaatatcgtagaaatgatctcatatagattatatttgaaggcccttgaatatttctt- 220 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 5939 agaaatatcgtagaaatgatctcatatagattatatttgaaggcccttgaagatgcaatc 5880 Query: 221 agaaatcgggcagtgaaattggtatagtcagtaagtttcctgagctatacgatgttttcc 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5879 agaaatcgggcagtgaaattggtatagtcagtaagtttcctgagctatacgatgttttcc 5820 Query: 281 tatgctctttaccctatttacttgttaatgacaaattggttatccaaatggattatcacc 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5819 tatgctctttaccctatttacttgttaatgacaaattggttatccaaatggattatcacc 5760 Query: 341 aattttcaaataaaatgtatgtgacaatgatatatttttaaaggtatactacattacagg 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5759 aattttcaaataaaatgtatgtgacaatgatatatttttaaaggtatactacattacagg 5700 Query: 401 atgtgatgggaatcaaaaggggtttggcatggatgggccaaaacagatggagaagaaccg 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5699 atgtgatgggaatcaaaaggggtttggcatggatgggccaaaacagatggagaagaaccg 5640 Query: 461 atgagagcggttttgtaaacgaacccgttggtgtataattgtataagagtgtatactatt 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5639 atgagagcggttttgtaaacgaacccgttggtgtataattgtataagagtgtatacta-t 5581 Query: 521 tttttttctaaatcttgaatataaaagttgttgtacttatttccttttatttaatataaa 580 |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 5580 tttttttctaaatcttgaatat-aaagttgttgtacttattt-cttttatttaatataat 5523 Query: 581 tggaaaatgatgttggnggnnggtaattagat-tttaaaaaaaaattaaagagcccacgc 639 |||||||||||||| | | | |||| |||| | |||||||||| ||||||| || || Sbjct: 5522 tggaaaatgatgtt-gttgttgttaataagatataaaaaaaaaaataaaagagcacaagc 5464 Query: 640 tgggataagaagtcttaccgaaca 663 |||||||||| ||||||||||||| Sbjct: 5463 tgggataagaggtcttaccgaaca 5440 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,875 Number of Sequences: 1807 Number of extensions: 10875 Number of successful extensions: 110 Number of sequences better than 1.0e-20: 1 length of query: 942 length of database: 10,358,551 effective HSP length: 16 effective length of query: 926 effective length of database: 10,329,639 effective search space: 9565245714 effective search space used: 9565245714 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)