BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA01FM1.SCF screened BAC_end
(863 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 829 0.0
>3x_Contig1020
Length = 4879
Score = 829 bits (418), Expect = 0.0
Identities = 498/514 (96%), Gaps = 8/514 (1%)
Strand = Plus / Plus
Query: 86 attagactaattacccactctttaggtggtgaagcttatt-tgaactttg-aaggtaacg 143
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2528 attagactaattacccactctttaggtggtgaagcttattatgaactttgcaaggtaacg 2587
Query: 144 agtttggtcaccctgaatggttggatttccctaacgttaacaacggcgatagttaccatt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 agtttggtcaccctgaatggttggatttccctaacgttaacaacggcgatagttaccatt 2647
Query: 204 atgctagaaggcagttcaacttggtggatgaccctttgttgagataccaatacttgtatc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2648 atgctagaaggcagttcaacttggtggatgaccctttgttgagataccaatacttgtatc 2707
Query: 264 agtttgataaggctatgcaaactactgaaaagaattataaatggttgaatacaccacaag 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2708 agtttgataaggctatgcaaactactgaaaagaattataaatggttgaatacaccacaag 2767
Query: 324 cgtatgtctctttgaaacacgaagttgacaaagtcatcgcattcgaaag-aatggactct 382
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 2768 cgtatgtctctttgaaacacgaagttgacaaggtcatcgcattcgaaagaaatggactct 2827
Query: 383 tgttcatcttc-atttccatccgacagaatccttcacagattatcgtattgggagtaatg 441
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2828 tgttcatcttcaatttccatccgacagaatccttcacagattatcgtattggagttaatg 2887
Query: 442 agccaggttgctaccgtatcgtattgaactcagacaagcatgaatacggtgggctgggat 501
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2888 agccaggttgctaccgtatcgtattgaactcagacaagcatgaatacggt-ggctgggat 2946
Query: 502 cgtatcaatgagtccc-atccaagtattttactactgaattgaaatgggacgaaagaaac 560
|||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 2947 cgtatcgatgagtcccaatccaagtattttactactgatttgaaatggaacgaaagaaac 3006
Query: 561 aa-ttcatcca-gtttacatttcaaaccgtaccg 592
|| |||||||| ||||||||| ||||||||||||
Sbjct: 3007 aatttcatccaggtttacattccaaaccgtaccg 3040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,494
Number of Sequences: 1807
Number of extensions: 32494
Number of successful extensions: 2610
Number of sequences better than 1.0e-20: 1
length of query: 863
length of database: 10,358,551
effective HSP length: 16
effective length of query: 847
effective length of database: 10,329,639
effective search space: 8749204233
effective search space used: 8749204233
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)