BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA01RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 1582 0.0
>3x_Contig1737
Length = 17214
Score = 1582 bits (798), Expect = 0.0
Identities = 845/857 (98%), Gaps = 3/857 (0%)
Strand = Plus / Minus
Query: 51 tgccaaagtagcgtcaccatccaagtgttggagcaattgtttgtacaacaattgggtcca 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7677 tgccaaagtagcgtcaccatccaagtgttggagcaattgtttgtacaacaattgggtcca 7618
Query: 111 gatagcacctgacacagctgatccaacagctgagccgattctgtacatggtgtaactcaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7617 gatagcacctgacacagctgatccaacagctgagccgattctgtacatggtgtaactcaa 7558
Query: 171 tgcggtgacagtggccatgttttcatgagaagtgacggattggagggacacggtgactgg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7557 tgcggtgacagtggccatgttttcatgagaagtgacggattggagggacacggtgactgg 7498
Query: 231 gtaagtgaacatggtggtaccgagaccccaaacgactagcgcaccgatgatacctttatc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7497 gtaagtgaacatggtggtaccgagaccccaaacgactagcgcaccgatgatacctttatc 7438
Query: 291 agaattttgaccggatctgaaatggaacaagatacccattgcgaccatccatagggaaca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7437 agaattttgaccggatctgaaatggaacaagatacccattgcgaccatccatagggaaca 7378
Query: 351 accagcgatgatgaatggctttaatctggtgaatctagtgatgaatagcgcaaagaaagg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7377 accagcgatgatgaatggctttaatctggtgaatctagtgatgaatagcgcaaagaaagg 7318
Query: 411 cgaaaatacggtggaagtgaaggtactgacactggaaattctggtggcagaagtgacact 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7317 cgaaaatacggtggaagtgaaggtactgacactggaaattctggtggcagaagtgacact 7258
Query: 471 ttcattcacagcaaccatcaagattgtgtacaagtaacctgcggccatggtgaagatgaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7257 ttcattcacagcaaccatcaagattgtgtacaagtaacctgcggccatggtgaagatgaa 7198
Query: 531 gttgatcaagaaggcaatacacaaagcagcccaaataccacggtctctcaacaacttgaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7197 gttgatcaagaaggcaatacacaaagcagcccaaataccacggtctctcaacaacttgaa 7138
Query: 591 tggagcaattggttcacgagcccatttggattcccatgcgataaagaatgggatcaagac 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7137 tggagcaattggttcacgagcccatttggattcccatgcgataaagaatgggatcaagac 7078
Query: 651 gaaacctaagatgaatggagcaatgatatgtggattgttccatttgtttgagataccacc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7077 gaaacctaagatgaatggagcaatgatatgtggattgttccatttgtttgagataccacc 7018
Query: 711 tgctagagtcaatgggaccaagatacaacccaagataataatcatgaagaaaacaccaat 770
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 7017 tgctagagtcaatgggaccaagatacaaccaaggataataatcatgaagaaaacaccaat 6958
Query: 771 gacgtccaatttcc-aaacatttgaaccagactttgtacgagcccatgtgtttggtagta 829
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6957 gacgtccaatttccaaaacaattgaaccagactttgtacgagcccatgtgtttggtagta 6898
Query: 830 agtcttttgagaggacaattctttccagg-ctccgtttggctaactttcca-ttnatatg 887
||||||||||||||||||||||||||||| ||| ||||| ||| || |||| || |||||
Sbjct: 6897 agtcttttgagaggacaattctttccaggcctcggtttgtctagctctccatttcatatg 6838
Query: 888 tagcatacaccccaaca 904
||||||||| |||||||
Sbjct: 6837 tagcatacaacccaaca 6821
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5676
Number of Sequences: 1807
Number of extensions: 5676
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)