BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA03FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig819 991 0.0
>3x_Contig819
Length = 3350
Score = 991 bits (500), Expect = 0.0
Identities = 566/581 (97%), Gaps = 6/581 (1%)
Strand = Plus / Plus
Query: 85 accgaaggattttgtaataaaggaacattttgaagagattcaagagttattaaacaagga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 accgaaggattttgtaataaaggaacattttgaagagattcaagagttattaaacaagga 825
Query: 145 ttcggacttgaaaagcttacacgaagacgttgtcccagcacctcttgatgatgcaacatt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ttcggacttgaaaagcttacacgaagacgttgtcccagcacctcttgatgatgcaacatt 885
Query: 205 ttggaatatttacttcactaagaaggcggagattctaaatttggcctcaaagaagcgtga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ttggaatatttacttcactaagaaggcggagattctaaatttggcctcaaagaagcgtga 945
Query: 265 cttattaagtgccaaggaagatctaggtaaagaacaagcaataggatgggatgatgagga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 cttattaagtgccaaggaagatctaggtaaagaacaagcaataggatgggatgatgagga 1005
Query: 325 agaggattcagaagaagaaattattccttcntaaactgcaaaggctaaacaagactccaa 384
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1006 agaggattcagaagaagaaattattccttctaaaactgcaaaggctaaacaagactccaa 1065
Query: 385 cactggtaaggagactatttcttctgctaaaactgaatcaaaagctatcaagcaagagga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 cactggtaaggagactatttcttctgctaaaactgaatcaaaagctatcaagcaagagga 1125
Query: 445 aaatgacgacgaagaagatgatgattgggagtagttattggaaccgatctggtgtttctt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 aaatgacgacgaagaagatgatgattgggagtagttattggaaccgatctggtgtttctt 1185
Query: 505 cg-acactgattacattttgtatttccctacttaattaatta-tatacttacatgntnac 562
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct: 1186 cgaacactgattacattttgtatttccctacttaattaattattatacttacatgttaac 1245
Query: 563 tctacggtaaaacagcacatatgcattttagtgtgatattattcgtcctttccttctaat 622
||||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||
Sbjct: 1246 tctacggtaaaacagcacatatgca-ttaggtgtgata-tattcgtcc-ttccttctaat 1302
Query: 623 ttttctccaactgaacatcattaaaagaaccacaaccaact 663
||||||||||||| ||||||| |||||||| |||||||||
Sbjct: 1303 ttttctccaactg-acatcatcaaaagaacaccaaccaact 1342
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,206
Number of Sequences: 1807
Number of extensions: 10206
Number of successful extensions: 136
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)