BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA03RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1549 1076 0.0
3x_Contig1359 462 e-130
>3x_Contig1549
Length = 13677
Score = 1076 bits (543), Expect = 0.0
Identities = 562/566 (99%), Gaps = 2/566 (0%)
Strand = Plus / Minus
Query: 51 aacaccttcttatctaactacatggttcccaaagaaagttgtcttctctgtaatatcttc 110
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacaccttcttatctaac-acatggttcccaaagaaagttgtcttctctgtaatatcttc 506
Query: 111 ctgttcgatgctcttatcgtccttcaactcggccgctgcggaacttagaaggaactttct 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgttcgatgctcttatcgtccttcaactcggccgctgcggaacttagaaggaactttct 446
Query: 171 agctacatcttcctcatcgcttacggaataaacagactcactgagatcttttttatctgg 230
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 agctacatcttcctcatcgcttacggaataaacagactcactgagatcttctttatctgg 386
Query: 231 catcttttctggtttgcctatcttgttgacttcgttctattatttttaaattggggacat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catcttttctggtttgcctatcttgttgacttcgttctattatttttaaattggggacat 326
Query: 291 atcttcaaatttaccagggaggtaattcgattcatacttcgatccgatgaggttctttta 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcttcaaatttaccagggaggtaattcgattcatacttcgatccgatgaggttctttta 266
Query: 351 tacttctcgatccgtccaaagattcattccgattcctaaaccactaaaggtaactacaag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacttctcgatccgtccaaagattcattccgattcctaaaccactaaaggtaactacaag 206
Query: 411 aactgaaagaattgaaaaaaagtcttgccaacagaaacaggcaagtgcaagagaaaagga 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aactgaaagaattgaaaaaaagtcttgccaacagaaacaggcaagtgcaagagaaaagga 146
Query: 471 ccatctggcccatctggcaccttttttccattcatttcacctcatttcatgcaatatgca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ccatctggcccatctggcaccttttttccattcatttcacctcatttcatgcaatatgca 86
Query: 531 tgtatgtagctcaatgcaagatgcggttacgttgatctggctaaagcaggtaacgtgact 590
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 85 tgtatgtagctcaatgcaagatgcggttacgttgatctgg-taaagcaggtaacgtgact 27
Query: 591 agcaaagggncctactatcttagata 616
||||||||| ||||||||||||||||
Sbjct: 26 agcaaagggtcctactatcttagata 1
>3x_Contig1359
Length = 7536
Score = 462 bits (233), Expect = e-130
Identities = 285/298 (95%), Gaps = 5/298 (1%)
Strand = Plus / Plus
Query: 609 cttagataagctgataatgggattgggtcagaataana-tagaactagagaaaaagaaaa 667
|||||||||| |||||||| ||||| |||||||||| | |||||||||||||||||||||
Sbjct: 2 cttagataagatgataatgtgattgtgtcagaataaaaatagaactagagaaaaagaaaa 61
Query: 668 ggaanaacgtgcgcgacgaggctcgagagaagcgtcagattaaattgttaacgacagaaa 727
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggaaaaacgtgcgcgacgaggctcgagagaagcgtcagattaaattgttaacgacagaa- 120
Query: 728 tgcaggattataaaaaa--cataaagggtttagtggacatactagatctgttgtctctta 785
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcaggattataaaaaaaacataaagggtttagtggacatactagatctgttgtctctta 180
Query: 786 gcttcttggcatttagtcctttttgaaagagcacattttaagacacac-agaaacggata 844
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 181 gcttcttggcatttagtcctttttgaaagagcacattttaagacacacaagaaacggata 240
Query: 845 tctgtgaataacgtagtttctgccaagtggaaacgatgtggaaattgacattggtctt 902
|||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct: 241 tctgtgaataacgtagtttctgccaagtaggaacgatgtggaaattgacattgttctt 298
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6886
Number of Sequences: 1807
Number of extensions: 6886
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)