BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZA04FM1.SCF screened BAC_end (924 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig560 632 0.0 3x_Contig1350 176 5e-44 >3x_Contig560 Length = 2642 Score = 632 bits (319), Expect = 0.0 Identities = 403/425 (94%), Gaps = 5/425 (1%) Strand = Plus / Plus Query: 86 ttgcctggaatttggtgggatcaatacacaaatggcccactaccagtaatattgtgtttg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2217 ttgcctggaatttggtgggatcaatacacaaatggcccactaccagtaatattgtgtttg 2276 Query: 146 actcatttctacaaacagtatacaccaaggttatacgaattcaatataataatcaaccaa 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2277 actcatttctacaaacagtatacaccaaggttatacgaattcaatataataatcaaccaa 2336 Query: 206 ccttttcttcttcattctaacacgatcgtttggaagctgacagatcaatttttcatccat 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2337 ccttttcttcttcattctaacacgatcgtttggaagctgacagatcaatttttcatccat 2396 Query: 266 ggcctgttattccttgccatgggtaatcaaagcgcaacagggttggtaatcggactataa 325 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | Sbjct: 2397 ggcctgttattccttgccatggtaaatcaaggcgcaacagggttggtaatcggactaata 2456 Query: 326 agtt-gatttgtgctatcttgatgggatatgggctactaccangtactgacttcttccaa 384 |||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||||| Sbjct: 2457 agttggatttgtgctatcttgatggataatgggctactaccaggtactgactccttccaa 2516 Query: 385 tttgcg-ctttc-aagacagctggaacagaaagtctagcacattanacagaccaagcgca 442 || ||| ||||| |||||||||||||||||| |||||||||||| |||||||||||||| Sbjct: 2517 ttggcgcctttcaaagacagctggaacagaagttctagcacattaaacagaccaagcgca 2576 Query: 443 gttatgacaaacgatatgacatccgaaagatctaaatgaggaagaggccgaagaacctca 502 |||||||||||||| ||||||| || ||||||||||||||| |||||||| ||||||||| Sbjct: 2577 gttatgacaaacga-atgacat-cggaagatctaaatgagggagaggccggagaacctca 2634 Query: 503 agatg 507 ||||| Sbjct: 2635 agatg 2639 >3x_Contig1350 Length = 6538 Score = 176 bits (89), Expect = 5e-44 Identities = 221/253 (87%), Gaps = 9/253 (3%) Strand = Plus / Minus Query: 483 gaagaggccgaagaacctcaagatgaacctcagcgcactttaggngtccagttctttgga 542 ||||||||||| | ||||||||| ||||||| |||||||||||| ||||||||||| | | Sbjct: 6470 gaagaggccga-gtacctcaaga-gaacctc-gcgcactttagg-gtccagttctt-gaa 6416 Query: 543 tacttttagaaggtgaaacactttttgtagaatatgataatatttaaatctatcaatgcg 602 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 6415 tacttttagaaggtgaaacactttttgtagataatgataatatttaaatctatcaatgcg 6356 Query: 603 tttgattcaattacatgggggattttacataaataggattttaagaaaccagttcaccca 662 ||||||||||||||||| | | | |||||||||||||||| |||||| ||||||| ||| Sbjct: 6355 -ttgattcaattacatggtgta-tatacataaataggatttaaagaaa-cagttcaacca 6299 Query: 663 gaaaacccttctttttaaatgtggtggcctcctttgaacattccaattttttaatttaac 722 ||| | ||||| |||| || || | ||||||||||||||| |||||| | |||| || | Sbjct: 6298 gaagagccttcctttttcatctgct-gcctcctttgaacatcccaattgtataatctagc 6240 Query: 723 ccaattgaactcc 735 ||||||| |||| Sbjct: 6239 acaattgacctcc 6227 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7959 Number of Sequences: 1807 Number of extensions: 7959 Number of successful extensions: 64 Number of sequences better than 1.0e-20: 2 length of query: 924 length of database: 10,358,551 effective HSP length: 16 effective length of query: 908 effective length of database: 10,329,639 effective search space: 9379312212 effective search space used: 9379312212 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)