BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZA04FM1.SCF screened BAC_end
         (924 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig560                                                          632   0.0  
3x_Contig1350                                                         176   5e-44

>3x_Contig560 
          Length = 2642

 Score =  632 bits (319), Expect = 0.0
 Identities = 403/425 (94%), Gaps = 5/425 (1%)
 Strand = Plus / Plus

                                                                        
Query: 86   ttgcctggaatttggtgggatcaatacacaaatggcccactaccagtaatattgtgtttg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 ttgcctggaatttggtgggatcaatacacaaatggcccactaccagtaatattgtgtttg 2276

                                                                        
Query: 146  actcatttctacaaacagtatacaccaaggttatacgaattcaatataataatcaaccaa 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 actcatttctacaaacagtatacaccaaggttatacgaattcaatataataatcaaccaa 2336

                                                                        
Query: 206  ccttttcttcttcattctaacacgatcgtttggaagctgacagatcaatttttcatccat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2337 ccttttcttcttcattctaacacgatcgtttggaagctgacagatcaatttttcatccat 2396

                                                                        
Query: 266  ggcctgttattccttgccatgggtaatcaaagcgcaacagggttggtaatcggactataa 325
            ||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||  |
Sbjct: 2397 ggcctgttattccttgccatggtaaatcaaggcgcaacagggttggtaatcggactaata 2456

                                                                        
Query: 326  agtt-gatttgtgctatcttgatgggatatgggctactaccangtactgacttcttccaa 384
            |||| ||||||||||||||||||||   |||||||||||||| ||||||||| |||||||
Sbjct: 2457 agttggatttgtgctatcttgatggataatgggctactaccaggtactgactccttccaa 2516

                                                                        
Query: 385  tttgcg-ctttc-aagacagctggaacagaaagtctagcacattanacagaccaagcgca 442
            || ||| ||||| ||||||||||||||||||  |||||||||||| ||||||||||||||
Sbjct: 2517 ttggcgcctttcaaagacagctggaacagaagttctagcacattaaacagaccaagcgca 2576

                                                                        
Query: 443  gttatgacaaacgatatgacatccgaaagatctaaatgaggaagaggccgaagaacctca 502
            |||||||||||||| ||||||| || ||||||||||||||| |||||||| |||||||||
Sbjct: 2577 gttatgacaaacga-atgacat-cggaagatctaaatgagggagaggccggagaacctca 2634

                 
Query: 503  agatg 507
            |||||
Sbjct: 2635 agatg 2639


>3x_Contig1350 
          Length = 6538

 Score =  176 bits (89), Expect = 5e-44
 Identities = 221/253 (87%), Gaps = 9/253 (3%)
 Strand = Plus / Minus

                                                                        
Query: 483  gaagaggccgaagaacctcaagatgaacctcagcgcactttaggngtccagttctttgga 542
            ||||||||||| | ||||||||| ||||||| |||||||||||| ||||||||||| | |
Sbjct: 6470 gaagaggccga-gtacctcaaga-gaacctc-gcgcactttagg-gtccagttctt-gaa 6416

                                                                        
Query: 543  tacttttagaaggtgaaacactttttgtagaatatgataatatttaaatctatcaatgcg 602
            |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 6415 tacttttagaaggtgaaacactttttgtagataatgataatatttaaatctatcaatgcg 6356

                                                                        
Query: 603  tttgattcaattacatgggggattttacataaataggattttaagaaaccagttcaccca 662
             ||||||||||||||||| | | | |||||||||||||||| |||||| ||||||| |||
Sbjct: 6355 -ttgattcaattacatggtgta-tatacataaataggatttaaagaaa-cagttcaacca 6299

                                                                        
Query: 663  gaaaacccttctttttaaatgtggtggcctcctttgaacattccaattttttaatttaac 722
            ||| | ||||| ||||  || || | ||||||||||||||| |||||| | |||| || |
Sbjct: 6298 gaagagccttcctttttcatctgct-gcctcctttgaacatcccaattgtataatctagc 6240

                         
Query: 723  ccaattgaactcc 735
             ||||||| ||||
Sbjct: 6239 acaattgacctcc 6227


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7959
Number of Sequences: 1807
Number of extensions: 7959
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)