BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZA05FM1.SCF screened BAC_end (921 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1339 963 0.0 >3x_Contig1339 Length = 6194 Score = 963 bits (486), Expect = 0.0 Identities = 591/618 (95%), Gaps = 6/618 (0%) Strand = Plus / Minus Query: 86 gccctctgcttctctgatagatctttgtagatctctaacgtattctagagatacagagat 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4912 gccctctgcttctctgatagatctttgtagatctctaacgtattctagagatacagagat 4853 Query: 146 accgatgtcgacaggtttgttgacagttgggaacttagcgttctgtacggaaccttcttt 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4852 accgatgtcgacaggtttgttgacagttgggaacttagcgttctgtacggaaccttcttt 4793 Query: 206 ctttaagacttcacggtaaatgtagtcagcgaaatgtggtgctactggtgctagcaacaa 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4792 ctttaagacttcacggtaaatgtagtcagcgaaatgtggtgctactggtgctagcaacaa 4733 Query: 266 tacttgtgtttcaatgtaacgtagcactagatcacggtgcatgacatcagatgcctcacg 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4732 tacttgtgtttcaatgtaacgtagcactagatcacggtgcatgacatcagatgcctcacg 4673 Query: 326 atagtaatctctagcagcttgataatcgaacaaaccgtacttcatagcacttttataatt 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4672 atagtaatctctagcagcttgataatcgaacaaaccgtacttcatagcacttttataatt 4613 Query: 386 ggtggcagcgtattgcttgtaagtttgttcgatcaatgaattcatttcattttcgaacgc 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4612 ggtggcagcgtattgcttgtaagtttgttcgatcaatgaattcatttcattttcgaacgc 4553 Query: 446 gatgtcaaagaatccatactctgagtcggtacgcaaattcccaatgtccttgaccatttt 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 4552 gatgtcaaagaatccatactctgagtcggtacgcaaattcccaatgtccttgacca-ttt 4494 Query: 506 cttcggcccattcttttcag-tatagagtcttag-atagcagcattagcattagattc-t 562 |||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| | Sbjct: 4493 cttcggcccattctttcaagttatagagtcttagaatagcagcattagcattagattcat 4434 Query: 563 tcaagttggcatctttaacagtggtacttgcattaccaagagcaatacgggaagcattcg 622 |||||||||||||| ||||||| || ||||| | ||||||||||||||||||||| | Sbjct: 4433 ccaagttggcatcttcaacagtgtcacctgcatcagcaagagcaatacgggaagcatcgg 4374 Query: 623 caccgaattttcttaccattgtctggcaaagtcatgtagtttacctgtagacttggaaat 682 |||||||||| | |||| |||| ||||||||||| || ||||||||||||||||| || Sbjct: 4373 caccgaatttcgtcacca-tgtcgtgcaaagtcatgaag-ttacctgtagacttggacat 4316 Query: 683 tttagcttttttcaacat 700 ||||| || |||||||| Sbjct: 4315 cttagcattgttcaacat 4298 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6949 Number of Sequences: 1807 Number of extensions: 6949 Number of successful extensions: 73 Number of sequences better than 1.0e-20: 1 length of query: 921 length of database: 10,358,551 effective HSP length: 16 effective length of query: 905 effective length of database: 10,329,639 effective search space: 9348323295 effective search space used: 9348323295 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)