BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZA05FM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1339                                                         963   0.0  

>3x_Contig1339 
          Length = 6194

 Score =  963 bits (486), Expect = 0.0
 Identities = 591/618 (95%), Gaps = 6/618 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   gccctctgcttctctgatagatctttgtagatctctaacgtattctagagatacagagat 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 gccctctgcttctctgatagatctttgtagatctctaacgtattctagagatacagagat 4853

                                                                        
Query: 146  accgatgtcgacaggtttgttgacagttgggaacttagcgttctgtacggaaccttcttt 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4852 accgatgtcgacaggtttgttgacagttgggaacttagcgttctgtacggaaccttcttt 4793

                                                                        
Query: 206  ctttaagacttcacggtaaatgtagtcagcgaaatgtggtgctactggtgctagcaacaa 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 ctttaagacttcacggtaaatgtagtcagcgaaatgtggtgctactggtgctagcaacaa 4733

                                                                        
Query: 266  tacttgtgtttcaatgtaacgtagcactagatcacggtgcatgacatcagatgcctcacg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4732 tacttgtgtttcaatgtaacgtagcactagatcacggtgcatgacatcagatgcctcacg 4673

                                                                        
Query: 326  atagtaatctctagcagcttgataatcgaacaaaccgtacttcatagcacttttataatt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4672 atagtaatctctagcagcttgataatcgaacaaaccgtacttcatagcacttttataatt 4613

                                                                        
Query: 386  ggtggcagcgtattgcttgtaagtttgttcgatcaatgaattcatttcattttcgaacgc 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4612 ggtggcagcgtattgcttgtaagtttgttcgatcaatgaattcatttcattttcgaacgc 4553

                                                                        
Query: 446  gatgtcaaagaatccatactctgagtcggtacgcaaattcccaatgtccttgaccatttt 505
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4552 gatgtcaaagaatccatactctgagtcggtacgcaaattcccaatgtccttgacca-ttt 4494

                                                                        
Query: 506  cttcggcccattcttttcag-tatagagtcttag-atagcagcattagcattagattc-t 562
            ||||||||||||||||  || ||||||||||||| ||||||||||||||||||||||| |
Sbjct: 4493 cttcggcccattctttcaagttatagagtcttagaatagcagcattagcattagattcat 4434

                                                                        
Query: 563  tcaagttggcatctttaacagtggtacttgcattaccaagagcaatacgggaagcattcg 622
             |||||||||||||| |||||||  || ||||| | |||||||||||||||||||||  |
Sbjct: 4433 ccaagttggcatcttcaacagtgtcacctgcatcagcaagagcaatacgggaagcatcgg 4374

                                                                        
Query: 623  caccgaattttcttaccattgtctggcaaagtcatgtagtttacctgtagacttggaaat 682
            ||||||||||  | |||| ||||  ||||||||||| || ||||||||||||||||| ||
Sbjct: 4373 caccgaatttcgtcacca-tgtcgtgcaaagtcatgaag-ttacctgtagacttggacat 4316

                              
Query: 683  tttagcttttttcaacat 700
             ||||| || ||||||||
Sbjct: 4315 cttagcattgttcaacat 4298


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6949
Number of Sequences: 1807
Number of extensions: 6949
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)