BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZA05RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1731                                                        1241   0.0  

>3x_Contig1731 
          Length = 24233

 Score = 1241 bits (626), Expect = 0.0
 Identities = 701/718 (97%), Gaps = 6/718 (0%)
 Strand = Plus / Minus

                                                                         
Query: 48    tctgttgtttctggtgggaaggtcgctcttcctaggatt-acaatagatccgcgactaga 106
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15505 tctgttgtttctggtgggaaggtcgctcttcctaggattcacaatagatccgcgactaga 15446

                                                                         
Query: 107   aaatcggtgagttgtcttactcaggacgggtcagcatacattgtccctttcaacaatcag 166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15445 aaatcggtgagttgtcttactcaggacgggtcagcatacattgtccctttcaacaatcag 15386

                                                                         
Query: 167   ttcaaagtgtattcaattgatactagacaatgtattaagacattgaaatttgctaataat 226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15385 ttcaaagtgtattcaattgatactagacaatgtattaagacattgaaatttgctaataat 15326

                                                                         
Query: 227   gatattttgacttcgatactcgatgagccttctgtagaggtggtgcatatcgagcctatt 286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15325 gatattttgacttcgatactcgatgagccttctgtagaggtggtgcatatcgagcctatt 15266

                                                                         
Query: 287   attgacgatgagatggataagatcagagtgtataccaacactgcgaaagtagttatattg 346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15265 attgacgatgagatggataagatcagagtgtataccaacactgcgaaagtagttatattg 15206

                                                                         
Query: 347   aagtataagggtaaattagccacggagattaaaacttggtctttgaatattactggcgag 406
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15205 aagtataagggtaaattagccacggagattaaaacttggtctttgaatattactggcgag 15146

                                                                         
Query: 407   ttatttgcagttcttggcgatgggaagaaattacttacagttcagaaaacagggaactct 466
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15145 ttatttgcagttcttggcgatgggaagaaattacttacagttcagaaaacagggaactct 15086

                                                                         
Query: 467   tacagatatgatctatatgaaaacgttgaagagaaagaggaagaatctgaggttaaacac 526
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15085 tacagatatgatctatatgaaaacgttgaagagaaagaggaagaatctgaggttaaacac 15026

                                                                         
Query: 527   cttgaaacttttgagaatgttttactttcaacttggtctaataacaataactaccttgcc 586
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15025 cttgaaacttttgagaatgttttactttcaacttggtctaataacaataactaccttgcc 14966

                                                                         
Query: 587   ctagtttatttgaaccaggaaact-aaaaacatgtgctgatcaaatctatggtcgac-ac 644
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 14965 ctagtttatttgaaccaggaaactaaaaaacatgtgctgatcaaatctatggtcgacaac 14906

                                                                         
Query: 645   agttcagttagaaacttccca-taccatctac-acatcttataccaccataaatt-ccat 701
             |||||||||   ||||||||| |||||||||| ||||||  |||||||||||||| ||||
Sbjct: 14905 agttcagttcagaacttcccagtaccatctacaacatctagtaccaccataaattcccat 14846

                                                                       
Query: 702   tttggcactggttttgcgttagataacgacgggcagcaatgggctattggatttgcat 759
             |||| ||||| | ||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct: 14845 tttgtcactgctcttgcgttagataacgacggccagcagttggctattggatttgcat 14788


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7138
Number of Sequences: 1807
Number of extensions: 7138
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)