BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA06FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1209 1059 0.0
>3x_Contig1209
Length = 5033
Score = 1059 bits (534), Expect = 0.0
Identities = 609/626 (97%), Gaps = 6/626 (0%)
Strand = Plus / Minus
Query: 87 ctgaagtgctgttagtcgtgcgatgtatgccttaatctataatctttaatattctgttcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 ctgaagtgctgttagtcgtgcgatgtatgccttaatctataatctttaatattctgttcg 2510
Query: 147 ccaccttacatttcagaaggtgtatcgatctatatatttcatatttacaaaacgtcaatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2509 ccaccttacatttcagaaggtgtatcgatctatatatttcatatttacaaaacgtcaatc 2450
Query: 207 gaagcatgaaagtcgttaataatgacaattctccaaacaaatgctgtgagaagtggatga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2449 gaagcatgaaagtcgttaataatgacaattctccaaacaaatgctgtgagaagtggatga 2390
Query: 267 actagatatgtgacagcaaatcatctccatctgcactttcatcatcaaataatgtagttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 actagatatgtgacagcaaatcatctccatctgcactttcatcatcaaataatgtagttc 2330
Query: 327 aatgcaatacttcatgcctttctttttgagatataaaccttttatatgctatctatagac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 aatgcaatacttcatgcctttctttttgagatataaaccttttatatgctatctatagac 2270
Query: 387 tgtttggcatttttccaagactctgaacaatcctttaaccatgatgttatattgtggngc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2269 tgtttggcatttttccaagactctgaacaatcctttaaccatgatgttatattgtgg-gc 2211
Query: 447 tagttcgcggaaaatgaggaaccacttctcatggaaatatttctctaagttattcaaaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2210 tagttcgcggaaaatgaggaaccacttctcatggaaatatttctctaagttattcaaaga 2151
Query: 507 gttatccattgactcattgacttgttgtaagtccttttcgatgagtttgaaacattcatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2150 gttatccattgactcattgacttgttgtaagtccttttcgatgagtttgaaacattcatt 2091
Query: 567 cagttttntcagtttccttttctagtttgtttaactgtacaacccgtttcgttttta-tt 625
||||||| ||| |||||||||||||||||||| |||||||||||| ||||| |||| ||
Sbjct: 2090 cagtttt-tcaagttccttttctagtttgtttacctgtacaacccg-ttcgtctttagtt 2033
Query: 626 agaagatgaggtttcgacttcactggaattcaattcatatccaaacttgttgtttggaaa 685
||||||||||| |||||||||||| ||| || | ||| ||||| ||||||||||||| |
Sbjct: 2032 agaagatgagg-ttcgacttcacttgaaatcgaatcagatccagacttgttgtttgg-ag 1975
Query: 686 atgctgatgacctgaaaagccccatt 711
||||||||||||||||||||||||||
Sbjct: 1974 atgctgatgacctgaaaagccccatt 1949
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7706
Number of Sequences: 1807
Number of extensions: 7706
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)