BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA07FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1556 1158 0.0
>3x_Contig1556
Length = 10874
Score = 1158 bits (584), Expect = 0.0
Identities = 684/711 (96%), Gaps = 5/711 (0%)
Strand = Plus / Plus
Query: 85 ctactgaaaatgttcaagaaactggtaacaatgagacggaagtttcagaagctgttgctg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7498 ctactgaaaatgttcaagaaactggtaacaatgagacggaagtttcagaagctgttgctg 7557
Query: 145 gtgcggctgatgccaatgccggtgccaatgccgatgccaatccgatagtgacggttgatc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7558 gtgcggctgatgccaatgccggtgccaatgccgatgccaatccgatagtgacggttgatc 7617
Query: 205 cagttaattctgaaagttctgacgttgggaacgttaccactgtgataacagaaaaacctg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7618 cagttaattctgaaagttctgacgttgggaacgttaccactgtgataacagaaaaacctg 7677
Query: 265 tttccgagaccattgcattcattggattcattcctcgtaatacgactgataatcagctac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7678 tttccgagaccattgcattcattggattcattcctcgtaatacgactgataatcagctac 7737
Query: 325 gtgaatatttcaaaggatttgatccacaagaaattgttgtatttaaaaatagaacttata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7738 gtgaatatttcaaaggatttgatccacaagaaattgttgtatttaaaaatagaacttata 7797
Query: 385 gacgtgggttcactttccatcgccatttcacagcagccttggtaacgttccccgatgcct 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7798 gacgtgggttcactttccatcgccatttcacagcagccttggtaacgttccccgatgcct 7857
Query: 445 tcaggctaaacgatgcgaaacagtttgcaacacaagagaaatttangggcaaacagatta 504
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 7858 tcaggctaaacgatgcgaaacagtttgcaacacaagagaaatttaggggcaaacagataa 7917
Query: 505 acgtgaagaacgcatttatagaaaagattgaagaagtgcaaagggctttagagaagaagg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7918 acgtgaagaacgcatttatagaaaagattgaagaagtgcaaagggctttagagaagaagg 7977
Query: 565 cgggtgctaacactaatggagagtccgcggaa-gcaacaacgaaatcccagcagatgctg 623
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7978 cgggtgctaacactaatggagagtccgcggaaggcaacaacgaaatcccagcagatgct- 8036
Query: 624 ggggtaacaggagatgaacctgattcagctaatgctgttgcggcaatttctattgaggga 683
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct: 8037 ggggtaacaggagatgaacctgatacagctaatgctgttgcggcaattcctatcgaggga 8096
Query: 684 aattcttaacccacagctgaccgtaatgacggtgcttgtggtggaacccaaggccaattg 743
||| || |||| ||||||| ||||||||||||| ||||||||| ||| ||||||||
Sbjct: 8097 aatcctcaaccacaagctgacggtaatgacggtgc-tgtggtggagcccgaggccaatgc 8155
Query: 744 ccaaacgcttatttaaccaggaagtatggtttgacagcattgcaagacaat 794
| || |||||| | ||||||||| ||||| ||||||||| ||| ||||||
Sbjct: 8156 cgaaccgctta-tcgaccaggaag-atggtgtgacagcatcgcaggacaat 8204
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6040
Number of Sequences: 1807
Number of extensions: 6040
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)