BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZA07RM1.SCF screened BAC_end
         (920 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1704                                                        1308   0.0  

>3x_Contig1704 
          Length = 14855

 Score = 1308 bits (660), Expect = 0.0
 Identities = 696/704 (98%), Gaps = 3/704 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   tcgtttcgtaacaaaacaattgtatagaacagccgcaacattatcagtccttttgaagtc 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6594 tcgtttcgtaacaaaacaattgtatagaacagccgcaacattatcagtccttttgaagtc 6535

                                                                        
Query: 107  ctcaaatgataaaaatattttggataggtaaacaagaacataaattacagcttcctcatt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6534 ctcaaatgataaaaatattttggataggtaaacaagaacataaattacagcttcctcatt 6475

                                                                        
Query: 167  caggtctttaatggaattattgacagaaatgattagactatcacacaatctcgaggatga 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6474 caggtctttaatggaattattgacagaaatgattagactatcacacaatctcgaggatga 6415

                                                                        
Query: 227  tttgtttaaggcagcttgatacaaaaaaggtcgtagaagtgcatcgatcttacctgcaga 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6414 tttgtttaaggcagcttgatacaaaaaaggtcgtagaagtgcatcgatcttacctgcaga 6355

                                                                        
Query: 287  aaaactctggaggcgcaattgatttcttatttccgtgcaaacgtccttacctataacatc 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6354 aaaactctggaggcgcaattgatttcttatttccgtgcaaacgtccttacctataacatc 6295

                                                                        
Query: 347  agtcctcaaaaattcggtcaagttcacttgatcgttctccatatgtttcgtatactcatc 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6294 agtcctcaaaaattcggtcaagttcacttgatcgttctccatatgtttcgtatactcatc 6235

                                                                        
Query: 407  atagtatttcggtaaatagatgtggcagtttacagatatatcctttcgaagtaatttggt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 atagtatttcggtaaatagatgtggcagtttacagatatatcctttcgaagtaatttggt 6175

                                                                        
Query: 467  aatttgtctttgaaacgtcgaagaatccatattctttatgtaattaccaaattcgagttt 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 aatttgtctttgaaacgtcgaagaatccatattctttatgtaattaccaaattcgagttt 6115

                                                                        
Query: 527  gaactgattcacatactgaacgaatttgagtccaaacaaaggcttgaatccagttagcaa 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 gaactgattcacatactgaacgaatttgagtccaaacaaaggcttgaatccagttagcaa 6055

                                                                        
Query: 587  tgtaaagaagtttaatattagcttcaccaaagcgtggactttcacattagggtctttcag 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6054 tgtaaagaagtttaatattagcttcaccaaagcgtggactttcacattagggtctttcag 5995

                                                                        
Query: 647  aaagtatcgcgtatcatgagcaaagcattcc-aaagactttccgcgtgtctttttgtccg 705
            || |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  
Sbjct: 5994 aaggtatcgcgtatcatgagcaaagcattccaaaagactttccgcgtgtctttctgtcgt 5935

                                                        
Query: 706  tcctgttttcaatatcaac-gcattgtta-tacttttaaagttg 747
            ||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct: 5934 tcctgttttcaatatcaactgcattgttattacttttaatgttg 5891


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7573
Number of Sequences: 1807
Number of extensions: 7573
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)