BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA08FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1185 0.0
>3x_Contig1760
Length = 27266
Score = 1185 bits (598), Expect = 0.0
Identities = 695/722 (96%), Gaps = 4/722 (0%)
Strand = Plus / Minus
Query: 86 taaaatgcagatacatatcttcagtccatgcgatgagatgagatgaaatacaagacgcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20727 taaaatgcagatacatatcttcagtccatgcgatgagatgagatgaaatacaagacgcaa 20668
Query: 146 agattctagaatcctagaagcatagaggtgtttagggaatatcagactatagtaagatcg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20667 agattctagaatcctagaagcatagaggtgtttagggaatatcagactatagtaagatcg 20608
Query: 206 taagccagacaccatggtatccggagatgttggtagtgcttcgtttttgaacaagcagat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20607 taagccagacaccatggtatccggagatgttggtagtgcttcgtttttgaacaagcagat 20548
Query: 266 gaagatgagaggtttgcagaagcttcgattctattgtcagatatgtcagaaacaatgtcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20547 gaagatgagaggtttgcagaagcttcgattctattgtcagatatgtcagaaacaatgtcg 20488
Query: 326 agacgagaatgggttcaaatcgcattctaagtcgccatctcacttgcagaagcttagtaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20487 agacgagaatgggttcaaatcgcattctaagtcgccatctcacttgcagaagcttagtaa 20428
Query: 386 agtgactcataaggatattgaagagtatacggttcagtttgagaaggatttccttcgatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20427 agtgactcataaggatattgaagagtatacggttcagtttgagaaggatttccttcgatt 20368
Query: 446 gctacggcttatgcacggtgagaagaaagtggaagctaataagttctacaatgagtttat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20367 gctacggcttatgcacggtgagaagaaagtggaagctaataagttctacaatgagtttat 20308
Query: 506 tcaggacaaagaccatgtccatatgaacgctacgagattcacatcattgacgcgatttat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20307 tcaggacaaagaccatgtccatatgaacgctacgagattcacatcattgacgcgatttat 20248
Query: 566 acaacattttagccagggggggaaagtacggatccatggaatagatgagcttactagcga 625
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20247 acaacatttaagccagggggggaaagtacggatccatggaatagatgagcttactagcga 20188
Query: 626 tacagacccagaacgggttatgataagttatatcgactcgtcttcacc-aatttgatacc 684
||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 20187 tacagacccaggacggtttatgataagttatatcgactcgtcttcaccaaatatgatacg 20128
Query: 685 gaagaaaccaattgagtcatttgaccaagcccgacgtattgacccagagaataagcttaa 744
|||||||| ||| |||||||| | |||||| ||||| ||||| ||||| ||||| |||
Sbjct: 20127 gaagaaacaaatagagtcattgaaacaagccgaacgtagtgaccaagagattaagc-taa 20069
Query: 745 gctttttggaaaaaccaattgagaaaggccaaccctggaagaagtcaaatcgggtccaaa 804
| | ||||| |||| ||| ||| ||||||||| || ||||||||||||||||||| |||
Sbjct: 20068 ggctcttggagaaacaaatcgag-aaggccaacgct-gaagaagtcaaatcgggtcaaaa 20011
Query: 805 gg 806
||
Sbjct: 20010 gg 20009
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6633
Number of Sequences: 1807
Number of extensions: 6633
Number of successful extensions: 313
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)