BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA09FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig886 1063 0.0
>3x_Contig886
Length = 4262
Score = 1063 bits (536), Expect = 0.0
Identities = 590/607 (97%), Gaps = 1/607 (0%)
Strand = Plus / Minus
Query: 88 caggttgggaccattaacgaacaataaaaaaaaagtttacgttccgatagataaacttaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4130 caggttgggaccattaacgaacaataaaaaaaaagtttacgttccgatagataaacttaa 4071
Query: 148 gattttattcatccaggttttggtggggtggttgttgatagtaactttgatatttcatga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4070 gattttattcatccaggttttggtggggtggttgttgatagtaactttgatatttcatga 4011
Query: 208 attgataattctgttgtgaaggatggttatgcattggtgcgggaggaattgcgtacattg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4010 attgataattctgttgtgaaggatggttatgcattggtgcgggaggaattgcgtacattg 3951
Query: 268 aatgctgttgagatggaccttgcccatgactctgaattaatccctggccttgtgatgggt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950 aatgctgttgagatggaccttgcccatgactctgaattaatccctggccttgtgatgggt 3891
Query: 328 gtgctccttgaacctgccccggttggcggtagaaaggacccgacgaaattgaaggcttag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3890 gtgctccttgaacctgccccggttggcggtagaaaggacccgacgaaattgaaggcttag 3831
Query: 388 tggatgaaggaggagtcaccgaatgactttgtgagccttgtaaattcccctggtactggg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3830 tggatgaaggaggagtcaccgaatgactttgtgagccttgtaaattcccctggtactggg 3771
Query: 448 gttggatattactttgttgtggttgctgctgctgttgctgccgttgctgttgctgccgtt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3770 gttggatattactttgttgtggttgctgctgctgttgctgccgttgctgttgctgccgtt 3711
Query: 508 gctgttgctgtttctgttgcgactgttgttgcggctgttgatgctgntttaggaccatta 567
||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct: 3710 gctgttgctgtttctgttgcgactgttgttgcggctgctgatgctgtttagggaccatta 3651
Query: 568 tggaattgggggtcatgtttggagatccagaactgttgtgatggccccgcttgaactgaa 627
|||||||| || |||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct: 3650 tggaattgtggttcatgtttggagatccaggactgttgtgatggcccggcatgaactgag 3591
Query: 628 ccaactgcattcccaactgttcattttttctgttgcaccagattgtttttgcgttccaaa 687
|||||||||| | |||||||||| |||| |||||||| |||| |||| ||||||||||||
Sbjct: 3590 ccaactgcatccgcaactgttca-ttttcctgttgcagcagactgttcttgcgttccaaa 3532
Query: 688 tgtttga 694
|||||||
Sbjct: 3531 tgtttga 3525
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8767
Number of Sequences: 1807
Number of extensions: 8767
Number of successful extensions: 305
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)