BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZA09RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1544                                                        1257   0.0  

>3x_Contig1544 
          Length = 10626

 Score = 1257 bits (634), Expect = 0.0
 Identities = 731/753 (97%), Gaps = 8/753 (1%)
 Strand = Plus / Minus

                                                                        
Query: 45   ctttggccttaagaccatattatactgacgactcttcgctgaataatggcacgtattcca 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9714 ctttggccttaagaccatattatactgacgactcttcgctgaataatggcacgtattcca 9655

                                                                        
Query: 105  cgttgtatctgatggtccagttggttaatagcaccactggtcagccatttgaatcggatg 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9654 cgttgtatctgatggtccagttggttaatagcaccactggtcagccatttgaatcggatg 9595

                                                                        
Query: 165  gtagtacaattgcagatgatgatgagcggtggtcgtaccagatttccatatcttattgtg 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||
Sbjct: 9594 gtagtacaattgcagatgatgatgagcggtggtcgtaccagatttccatatctcagcgtg 9535

                                                                        
Query: 225  atcttgtctttcaatgggataaacgtccgtggcttgatgtcgttgacactgattacaatt 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9534 atcttgtctttcaatgggataaacgtccgtggcttgatgtcgttgacactgattacaatt 9475

                                                                        
Query: 285  ctgctttgttggttactggtaatgtcacagctatgtcgaagaccacatctaattattcga 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9474 ctgctttgttggttactggtaatgtcacagctatgtcgaagaccacatctaattattcga 9415

                                                                        
Query: 345  tctatgatgtcagcctttatgatatatacatctatgggttcgaatatgccgaatactttg 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9414 tctatgatgtcagcctttatgatatatacatctatgggttcgaatatgccgaatactttg 9355

                                                                        
Query: 405  ataatttgaacctatctcattccctttgtgccattcagaatgggccttatctaatttcat 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9354 ataatttgaacctatctcattccctttgtgccattcagaatgggccttatctaatttcat 9295

                                                                        
Query: 465  cggctaatggctcattgaacggaactaataatggtaatacagcagaaaatgcatctctat 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9294 cggctaatggctcattgaacggaactaataatggtaatacagcagaaaatgcatctctat 9235

                                                                        
Query: 525  cttctacaactctatcagttcataaatctattacggtacgcgggggtagcgcttaggaac 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9234 cttctacaactctatcagttcataaatctattacggtacgcgggggtagcgctaaggaac 9175

                                                                        
Query: 585  atttccatataactggcttaaattcgtc-accacgtacgttgcatatgtcacaaagaaat 643
            | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9174 aattccatataactggcttaaattcgtcaaccacgtacgttgcatatgtcacaaagaaat 9115

                                                                        
Query: 644  tagcca-cagcacaaagg-attggaagattctgggggtg-tctattntctaagcaa-tat 699
            |||||| ||||||||||| ||||||||||||||| |||| |||||| ||||||||| |||
Sbjct: 9114 tagccaccagcacaaaggaattggaagattctggtggtgttctattttctaagcaattat 9055

                                                                        
Query: 700  ttgaga-catggatgattcatcttg-tcactcatttttggattggaattttg-gaagggg 756
            |||||| |||||||||||||||||| |||||||| |||||||||| |||||| || || |
Sbjct: 9054 ttgagaccatggatgattcatcttgttcactcatctttggattgggattttgtgatggtg 8995

                                             
Query: 757  ttggatatttggtaccatcctggtctttactgg 789
            ||| ||||| ||||||||||| |||||||||||
Sbjct: 8994 ttgcatattcggtaccatcctcgtctttactgg 8962


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7001
Number of Sequences: 1807
Number of extensions: 7001
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)