BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA11FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1041 940 0.0
>3x_Contig1041
Length = 5356
Score = 940 bits (474), Expect = 0.0
Identities = 638/683 (93%), Gaps = 8/683 (1%)
Strand = Plus / Minus
Query: 88 caaacattgcatgaatctgatatgggcaacggaaatgaagaaccatgcgcaaagaccagc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 caaacattgcatgaatctgatatgggcaacggaaatgaagaaccatgcgcaaagaccagc 1388
Query: 148 caaagtagagatattaattaaccaattgaaagctgtatttgcattttcgttcgttgccaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 caaagtagagatattaattaaccaattgaaagctgtatttgcattttcgttcgttgccaa 1328
Query: 208 gaaggccaatatatctagcaaagcagtgcaaataacacccaagtatgggacaccttgttt 267
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 gaaggccaatagacctagcaaagcagtgcaaataacacccaagtatgggacaccttgttt 1268
Query: 268 ggtaacgtaagaaaattgttttggggcattaccgctaagggctagggagtaaaggactct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 ggtaacgtaagaaaattgttttggggcattaccgctaagggctagggagtaaaggactct 1208
Query: 328 ggaaccaacgtacacattggagttaccagcagaaagaatcgtcactagcacaaccgcgtt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 ggaaccaacgtacacattggagttaccagcagaaagaatcgtcactagcacaaccgcgtt 1148
Query: 388 gaaaatgtcaggtagtaccttagtaccagcattttgaatggaaatancaaatggggaaga 447
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1147 gaaaatgtcaggtagtaccttagtaccagcattttgaatggaaataacaaatggggaaga 1088
Query: 448 tgcantgactgcactattactttccaattgagggctgttgtatggaactaataaaccgac 507
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 tgcaatgactgcactattactttccaattgagggctgttgtatggaactaataaaccgac 1028
Query: 508 -aagaacanagaa-caatgttaaagacttaaatcctgaaaacaaccttg-taatagcttt 564
||||||| |||| |||||| ||||||| |||||||||||| |||||| ||||||||||
Sbjct: 1027 aaagaacaaagaaccaatgtaaaagactaaaatcctgaaaaacaccttgttaatagcttt 968
Query: 565 tggtacagttttttttggggttggagacttaccgggttgggat-ccgactaattcttggg 623
||||||||||||| ||||| ||| || ||| | || || ||| |||||||||||| |
Sbjct: 967 tggtacagtttttcttgggtttgaag-cttcaccggctgtgataccgactaattctgtgc 909
Query: 624 cttgataggtgaaaagaacctttcccaaggaacc-acccatcccaaaaatttggttttat 682
|||||||||||||| | | || |||||||||| ||||||||||||||| ||| |||||
Sbjct: 908 cttgataggtgaaagaagcattgaccaaggaaccaacccatcccaaaaatctggctttat 849
Query: 683 tgacttttttagcaatgggaccgggaccccatgggcccagattttttccaat-acggaaa 741
|||| ||||||||||||| ||||| |||||||||| |||| ||| |||||| ||||||
Sbjct: 848 tgacatttttagcaatggtaccggtaccccatggg-ccaggatttctccaataacggaac 790
Query: 742 ccaatagggccttggaaggaacc 764
|||||||||||||| |||||||
Sbjct: 789 ccaatagggccttgagaggaacc 767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5699
Number of Sequences: 1807
Number of extensions: 5699
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)