BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1679 1520 0.0
>3x_Contig1679
Length = 11609
Score = 1520 bits (767), Expect = 0.0
Identities = 850/873 (97%), Gaps = 5/873 (0%)
Strand = Plus / Plus
Query: 47 agaacaaagcacatataaaaaggaacaatacttacaggtgccacctgctagtagtgaact 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 agaacaaagcacatataaaaaggaacaatacttacaggtgccacctgctagtagtgaact 4930
Query: 107 gcggataacataattagaatgatagtctcagtaactcaaaagaaaacaatgatgtaccat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 gcggataacataattagaatgatagtctcagtaactcaaaagaaaacaatgatgtaccat 4990
Query: 167 cgaaatgggacatatttacttaaaacttaatgagcgtctgtcacagatatggtgtaataa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4991 cgaaatgggacatatttacttaaaacttaatgagcgtctgtcacagatatggtgtaataa 5050
Query: 227 atatacgataatcatactagtcatgatggttaagatactattgttcataaaaatgctatc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5051 atatacgataatcatactagtcatgatggttaagatactattgttcataaaaatgctatc 5110
Query: 287 aaacgggttcgaaaatataatggattataccatggagaattgccgtaacatcgattatta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5111 aaacgggttcgaaaatataatggattataccatggagaattgccgtaacatcgattatta 5170
Query: 347 ttattccaaatatgtcaattcttccccacattatatgggtcttatgggaaactttctaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5171 ttattccaaatatgtcaattcttccccacattatatgggtcttatgggaaactttctaat 5230
Query: 407 tcaaaaatctatggaacaaagtgtagcattatcgctaaaaagtatttcactgttggtatc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5231 tcaaaaatctatggaacaaagtgtagcattatcgctaaaaagtatttcactgttggtatc 5290
Query: 467 tgtttctgaaaatgtcatagattttatgatagatctttggttggggacatgggtatgctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5291 tgtttctgaaaatgtcatagattttatgatagatctttggttggggacatgggtatgctt 5350
Query: 527 aatcgtcagtgcaattgatggatcggttgatgttgcaacgaatgctacagaatctgtcat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351 aatcgtcagtgcaattgatggatcggttgatgttgcaacgaatgctacagaatctgtcat 5410
Query: 587 tgatttagtaaatggaacagtaagtagcgtcgcagatgagattgatgatggattgagcgg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5411 tgatttagtaaatggaacagtaagtagcgtcgcagatgagattgatgatggattgagcgg 5470
Query: 647 attgaccaaagtagttaataaagntctttcggctgtcaatgatattcagaatttcttt-a 705
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 5471 attgaccaaagtagttaataaagttctttcggctgtcaatgatattcagaatttctttaa 5530
Query: 706 agggaacgatgatgaatcagacatttatgatcaagtaaagaaagttaatttaacaataaa 765
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5531 agggaacgatgatgaatcagacattaatgatcaagtaaagaaagttaatttaacaataaa 5590
Query: 766 tggngctgagaacactttctattttcaagntctatagatgataagctggtgaagctgnct 825
||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||
Sbjct: 5591 tgg-gctgagaacactttcta-ttccaagttctatagatgataagctggtgaagctgtct 5648
Query: 826 gctaatacacctgattttgatacttgttagaattaaactaannacagc-attgccggttc 884
|||||||||||||||||||||||| | ||||| ||||||| | ||| ||||||| | |
Sbjct: 5649 gctaatacacctgattttgatactgttaagaataaaactaaaca-agcaattgccgttcc 5707
Query: 885 atttgntatctttcggaatgaaattaattcaat 917
||||| |||| | ||||||||||||| |||||
Sbjct: 5708 atttgatatcatcaggaatgaaattaaatcaat 5740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7461
Number of Sequences: 1807
Number of extensions: 7461
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)