BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZA12FM1.SCF screened BAC_end (911 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig641 622 e-178 >3x_Contig641 Length = 2317 Score = 622 bits (314), Expect = e-178 Identities = 408/434 (94%), Gaps = 6/434 (1%) Strand = Plus / Plus Query: 85 taaatactttatatattcacttgcctttaaataaaagttacacgagaaatgttccaaggt 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1679 taaatactttatatattcacttgcctttaaataaaagttacacgagaaatgttccaaggt 1738 Query: 145 ttctacctccatgggttttccgttatctcacctggaatgtcggccacggtcggttgagta 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1739 ttctacctccatgggttttccgttatctcacctggaatgtcggccacggtcggttgagta 1798 Query: 205 tcatctttagataatatcaacggatcagtcgttgcaatgctctcaggaccatcattttga 264 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1799 tcatctttagataagatcaacggatcagtcgttgcaatgctctcaggaccatcattttga 1858 Query: 265 tagcctttttttttccttttttcttgaaccaattccttcggttggggnnctttactgcct 324 ||||||||||||| | ||||||||||||||||||| ||||||| || |||| ||||| Sbjct: 1859 tagcctttttttt--cctttttcttgaaccaattccctcggttgtgg-tctttcatgcct 1915 Query: 325 nctttattgac-atttcaccttccgggtgcctttntttgcttttggcctctcccttttcc 383 |||||||||| |||||||||||||||||||||| | |||| ||| |||||||||| ||| Sbjct: 1916 cctttattgacaatttcaccttccgggtgcctttctctgctcttgtcctctcccttctcc 1975 Query: 384 ttttgagagaatatcttgttgaacctttgctgtac-accgccatggcattccattcttta 442 ||| ||||||||||||||||||||||||||||||| ||||||||||||| | || || || Sbjct: 1976 tttcgagagaatatcttgttgaacctttgctgtacaaccgccatggcatccgatcctcta 2035 Query: 443 taggggatgtctgctgtcgaaaacatcgaataagcgatcatcattatactgtttgaagat 502 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 2036 ta-gggatgtctgctgtcgaaaacatcgaataagcgatcatcagtatactgtttgaagat 2094 Query: 503 tctataataatttg 516 |||||||| ||||| Sbjct: 2095 tctataattatttg 2108 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,008 Number of Sequences: 1807 Number of extensions: 13008 Number of successful extensions: 162 Number of sequences better than 1.0e-20: 1 length of query: 911 length of database: 10,358,551 effective HSP length: 16 effective length of query: 895 effective length of database: 10,329,639 effective search space: 9245026905 effective search space used: 9245026905 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)