BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZA12FM1.SCF screened BAC_end
         (911 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig641                                                          622   e-178

>3x_Contig641 
          Length = 2317

 Score =  622 bits (314), Expect = e-178
 Identities = 408/434 (94%), Gaps = 6/434 (1%)
 Strand = Plus / Plus

                                                                        
Query: 85   taaatactttatatattcacttgcctttaaataaaagttacacgagaaatgttccaaggt 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 taaatactttatatattcacttgcctttaaataaaagttacacgagaaatgttccaaggt 1738

                                                                        
Query: 145  ttctacctccatgggttttccgttatctcacctggaatgtcggccacggtcggttgagta 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 ttctacctccatgggttttccgttatctcacctggaatgtcggccacggtcggttgagta 1798

                                                                        
Query: 205  tcatctttagataatatcaacggatcagtcgttgcaatgctctcaggaccatcattttga 264
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 tcatctttagataagatcaacggatcagtcgttgcaatgctctcaggaccatcattttga 1858

                                                                        
Query: 265  tagcctttttttttccttttttcttgaaccaattccttcggttggggnnctttactgcct 324
            |||||||||||||  | ||||||||||||||||||| ||||||| ||  ||||  |||||
Sbjct: 1859 tagcctttttttt--cctttttcttgaaccaattccctcggttgtgg-tctttcatgcct 1915

                                                                        
Query: 325  nctttattgac-atttcaccttccgggtgcctttntttgcttttggcctctcccttttcc 383
             |||||||||| |||||||||||||||||||||| | |||| ||| |||||||||| |||
Sbjct: 1916 cctttattgacaatttcaccttccgggtgcctttctctgctcttgtcctctcccttctcc 1975

                                                                        
Query: 384  ttttgagagaatatcttgttgaacctttgctgtac-accgccatggcattccattcttta 442
            ||| ||||||||||||||||||||||||||||||| ||||||||||||| | || || ||
Sbjct: 1976 tttcgagagaatatcttgttgaacctttgctgtacaaccgccatggcatccgatcctcta 2035

                                                                        
Query: 443  taggggatgtctgctgtcgaaaacatcgaataagcgatcatcattatactgtttgaagat 502
            || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2036 ta-gggatgtctgctgtcgaaaacatcgaataagcgatcatcagtatactgtttgaagat 2094

                          
Query: 503  tctataataatttg 516
            |||||||| |||||
Sbjct: 2095 tctataattatttg 2108


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,008
Number of Sequences: 1807
Number of extensions: 13008
Number of successful extensions: 162
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)