BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZA12RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 955 0.0
>3x_Contig1768
Length = 25668
Score = 955 bits (482), Expect = 0.0
Identities = 649/693 (93%), Gaps = 9/693 (1%)
Strand = Plus / Minus
Query: 43 cttggctagggcgtttgtctttgaatcaaatttgtaagtttgcctactgccaattgagaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cttggctagggcgtttgtctttgaatcaaatttgtaagtttgcctactgccaattgagaa 677
Query: 103 aattgggcgatccaaggaaggttgtggtgggagaggcatgtactgtaaaatcctttggtt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aattgggcgatccaaggaaggttgtggtgggagaggcatgtactgtaaaatcctttggtt 617
Query: 163 catatccaacccacatgcatttgcaactttttgtttgaacattttctttgtttgttttct 222
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 616 catatccaacccacatgcatttgcaactttttgtttgaacattttctttgtctgcgcgct 557
Query: 223 caaatgtttaaagggtgaagcgtttggtggtggttttatttcttcaggatcttcttccag 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caaatgtttaaagggtgaagcgtttggtggtggttttatttcttcaggatcttcttccag 497
Query: 283 atcaatgcacttggtgttttgtgaatgatgcacttgcggtatgaaacgatcagggtttgt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atcaatgcacttggtgttttgtgaatgatgcacttgcggtatgaaacgatcagggtttgt 437
Query: 343 ttcttggtcaattgaattataccctgtcccgcttaatggttcgtgaacaagcgattcttc 402
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 436 ttcttggtcaattgaattataccctgtcccgcttaatggttcgtgaacaggcgattcttc 377
Query: 403 tct-aaaaatgaa-aactcctccgcagtaaa-gtggaattccatttttagcaatcagctt 459
||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 376 tctaaaaaatgaagaactcctccgcagtaaaggtggaattccatttttagcaatcagctt 317
Query: 460 aggcctattgatagtatttgtcacgtttccaaacgtcgatttttccctttctctttgtaa 519
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 316 aggcctattgatagtatttgtcacgtttccaagcgtcga-ttttccctttctctttgtaa 258
Query: 520 tccttatcctcattagg-ataacatgtaactttgttggtgaaattaatgaaagcattgat 578
| ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 257 t-cttattctcattaggaataacatgtaactttgttggtgaagttaatgaaagcattgat 199
Query: 579 tgcttcccataaagctgcttattcttgtcc-tttccccatacaattagggcccttttttt 637
|||||| || ||||||| ||||||||||| ||||||||||| |||||||| ||| | |
Sbjct: 198 tgcttcgcagaaagctggctattcttgtccatttccccatacgattagggcacttctctc 139
Query: 638 ttttgaattttttacctanaaccaataatttccttcgtctgaattaaattggaagagat- 696
|||| | || ||||||| | ||||||| | |||||||||| || | || |||| |||
Sbjct: 138 ttttcgaattcttacctaacaacaataatatacttcgtctgagtttagtttgaag-gatg 80
Query: 697 tttaacaacctagttgcttggtcaagaaaatcc 729
| ||||||| |||||||||| ||||| ||||||
Sbjct: 79 tctaacaacgtagttgcttgttcaagtaaatcc 47
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,694
Number of Sequences: 1807
Number of extensions: 14694
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)